PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529776.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 529aa MW: 58877.4 Da PI: 8.334

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.9e-19	30	85	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ q+ +Le+++++++yps+e++++LA ++gLte+qV+ WF+ rR k+k+ XP_010529776.1 30 KKRRLKTPAQVMALENFYNEHKYPSEEMKAQLAGEIGLTEKQVSGWFCHRRLKDKR 85 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-20	15	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	26	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.28E-17	28	93	IPR009057	Homeodomain-like
SMART	SM00389	3.0E-19	28	90	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-16	30	85	IPR001356	Homeobox domain
CDD	cd00086	2.03E-18	30	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MNSGIFIVLI GFDSGEMHVD GDKISAENNK KRRLKTPAQV MALENFYNEH KYPSEEMKAQ 60 LAGEIGLTEK QVSGWFCHRR LKDKRSLKDE GNATVGRQDR SSVVIQDRGS GHRQDSCGST 120 KQTDYKNFEP REVESQRLYG SKYMGNVDGV DSTSSESSSS LHERVVSGKD VRDDAETSRY 180 VTRNGSATPV DTQVMRNYGY KPSGYLKLKG EIENAAIIAV KRQLGRHYRE DGPPLGVEFD 240 PLPPGAFENL PNEIVHVGPS LSTVLLEPIY VGNQRRSNHP HLAGNRKNPS PCPRYEAHDS 300 KMGSPEPFLE DENDDDAMVG VGPSFRGKKS HQQPRLKSPS LNHFTTFPNP NSLKDMGKDS 360 PLETPLYNSK KSWISSKPGP EGMRNDPVPN RHDRYSSNLE ISRASPYDYD NHIPETGHKS 420 GHSAKSSNLV PASGKSPDSM ERGLSSGRAK VGKYHGERNP VKMYREKLHV TDEPPVPKRT 480 KQSYLQHCYT SKAPYNEIMG CKSQTKGSCL EVPSSFSEDE TAETSSSMD

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MNSGIFIVLI GFDSGEMHVD GDKISAENNK KRRLKTPAQV MALENFYNEH KYPSEEMKAQ  60
LAGEIGLTEK QVSGWFCHRR LKDKRSLKDE GNATVGRQDR SSVVIQDRGS GHRQDSCGST  120
KQTDYKNFEP REVESQRLYG SKYMGNVDGV DSTSSESSSS LHERVVSGKD VRDDAETSRY  180
VTRNGSATPV DTQVMRNYGY KPSGYLKLKG EIENAAIIAV KRQLGRHYRE DGPPLGVEFD  240
PLPPGAFENL PNEIVHVGPS LSTVLLEPIY VGNQRRSNHP HLAGNRKNPS PCPRYEAHDS  300
KMGSPEPFLE DENDDDAMVG VGPSFRGKKS HQQPRLKSPS LNHFTTFPNP NSLKDMGKDS  360
PLETPLYNSK KSWISSKPGP EGMRNDPVPN RHDRYSSNLE ISRASPYDYD NHIPETGHKS  420
GHSAKSSNLV PASGKSPDSM ERGLSSGRAK VGKYHGERNP VKMYREKLHV TDEPPVPKRT  480
KQSYLQHCYT SKAPYNEIMG CKSQTKGSCL EVPSSFSEDE TAETSSSMD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	KKRRLK
2	474	481	PVPKRTKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529776.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529776.1	0.0	PREDICTED: uncharacterized protein LOC104806525 isoform X1
TrEMBL	V4L6S2	0.0	V4L6S2_EUTSA; Uncharacterized protein
STRING	XP_010529776.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein