PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529782.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 520aa MW: 57946.2 Da PI: 8.1467

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t+ q+ +Le+++++++yps+e++++LA ++gLte+qV+ WF+ rR k+k+ XP_010529782.1 21 KKRRLKTPAQVMALENFYNEHKYPSEEMKAQLAGEIGLTEKQVSGWFCHRRLKDKR 76 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-20	4	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	17	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.24E-17	19	84	IPR009057	Homeodomain-like
SMART	SM00389	3.0E-19	19	81	IPR001356	Homeobox domain
CDD	cd00086	2.72E-18	21	77	No hit	No description
Pfam	PF00046	1.1E-16	21	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MTEDSGEMHV DGDKISAENN KKRRLKTPAQ VMALENFYNE HKYPSEEMKA QLAGEIGLTE 60 KQVSGWFCHR RLKDKRSLKD EGNATVGRQD RSSVVIQDRG SGHRQDSCGS TKQTDYKNFE 120 PREVESQRLY GSKYMGNVDG VDSTSSESSS SLHERVVSGK DVRDDAETSR YVTRNGSATP 180 VDTQVMRNYG YKPSGYLKLK GEIENAAIIA VKRQLGRHYR EDGPPLGVEF DPLPPGAFEN 240 LPNEIVHVGP SLSTVLLEPI YVGNQRRSNH PHLAGNRKNP SPCPRYEAHD SKMGSPEPFL 300 EDENDDDAMV GVGPSFRGKK SHQQPRLKSP SLNHFTTFPN PNSLKDMGKD SPLETPLYNS 360 KKSWISSKPG PEGMRNDPVP NRHDRYSSNL EISRASPYDY DNHIPETGHK SGHSAKSSNL 420 VPASGKSPDS MERGLSSGRA KVGKYHGERN PVKMYREKLH VTDEPPVPKR TKQSYLQHCY 480 TSKAPYNEIM GCKSQTKGSC LEVPSSFSED ETAETSSSMD

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MTEDSGEMHV DGDKISAENN KKRRLKTPAQ VMALENFYNE HKYPSEEMKA QLAGEIGLTE  60
KQVSGWFCHR RLKDKRSLKD EGNATVGRQD RSSVVIQDRG SGHRQDSCGS TKQTDYKNFE  120
PREVESQRLY GSKYMGNVDG VDSTSSESSS SLHERVVSGK DVRDDAETSR YVTRNGSATP  180
VDTQVMRNYG YKPSGYLKLK GEIENAAIIA VKRQLGRHYR EDGPPLGVEF DPLPPGAFEN  240
LPNEIVHVGP SLSTVLLEPI YVGNQRRSNH PHLAGNRKNP SPCPRYEAHD SKMGSPEPFL  300
EDENDDDAMV GVGPSFRGKK SHQQPRLKSP SLNHFTTFPN PNSLKDMGKD SPLETPLYNS  360
KKSWISSKPG PEGMRNDPVP NRHDRYSSNL EISRASPYDY DNHIPETGHK SGHSAKSSNL  420
VPASGKSPDS MERGLSSGRA KVGKYHGERN PVKMYREKLH VTDEPPVPKR TKQSYLQHCY  480
TSKAPYNEIM GCKSQTKGSC LEVPSSFSED ETAETSSSMD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	KKRRLK
2	465	472	PVPKRTKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529782.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529782.1	0.0	PREDICTED: uncharacterized protein LOC104806525 isoform X2
TrEMBL	V4L6S2	0.0	V4L6S2_EUTSA; Uncharacterized protein
STRING	XP_010529776.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein