PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529836.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 232aa MW: 26235.7 Da PI: 9.4158

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.6e-32	20	73	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ XP_010529836.1 20 PRLRWTPELHHCFVLAIERLGGQHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-31	16	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.851	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	1.67E-15	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-24	20	74	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-8	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MVSCGRSNGA VRQYVRSKVP RLRWTPELHH CFVLAIERLG GQHKATPKLV LQLMDVKGLT 60 ISHVKSHLQM YRSMKSDLGC RQDQRRQFTE EYDGCVVDHS SLYSIGLHSS IRKRARGAER 120 KRMWSVEEEH QRKNQNQNQN QSYGKENIDA PPPFNLLKMP EKEEEEAAIG EGLSLSLRGP 180 YTHGSNCYST SETSAVSSAS TSLFKRGSPP PESPCHRHRY INLDLSIALS GC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	21	75	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529836.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529836.1	1e-174	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	D7SMG8	4e-51	D7SMG8_VITVI; Uncharacterized protein
STRING	XP_010529836.1	1e-174	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	3e-33	G2-like family protein