PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529849.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 469aa MW: 52168.6 Da PI: 7.0721

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.2e-06	361	396	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++++ L++++ + +K + a++L++A+ YIk Lq XP_010529849.1 361 KVRDKITSLQQIVSPF-----GKTDTASVLQEAITYIKFLQ 396 78999******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.829	346	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0024	355	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.37E-6	360	400	No hit	No description
SuperFamily	SSF47459	5.76E-10	360	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-9	361	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MREECTVNSA AAAGAQGSSW WDVQNHHANS FSSLYNNRKN SGNNLNSSCE DDLSITNASN 60 HSGLTAESSH RCLVSADQSA SSDELLREHV SSHNHLWSHA LLHGGNSVDM HESNGNLGEQ 120 MIDHFTSKKP SAPTSFEPPC DNYPKKMDSN GNFWNYSNQI RYGLDDQDQS LVQSHRLSKF 180 SNLVGNWSIA PPNPDMNHHH LDSQTSDNVS LCSTLAHHYK QNLDDMGSYS EHDLRIKSED 240 FCFNQLGPPS NIGYHNCHGG ESGYINGFPH SPCESSRSFL DIRLTRTLSD IDPSFKPCLK 300 SLSLSKFKKK ELQTTSMTSG TSGMTIEGKN KRCMEVSDEV SKKAKNGSSA TSPAKEVPKA 360 KVRDKITSLQ QIVSPFGKTD TASVLQEAIT YIKFLQEQVK LLSTPYMKNS LKDPWGGWER 420 EDNSKGDAKY LDLRSKGLCL VPVSFTPRSY RESTGADYWS PTYRGCLYR

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MREECTVNSA AAAGAQGSSW WDVQNHHANS FSSLYNNRKN SGNNLNSSCE DDLSITNASN  60
HSGLTAESSH RCLVSADQSA SSDELLREHV SSHNHLWSHA LLHGGNSVDM HESNGNLGEQ  120
MIDHFTSKKP SAPTSFEPPC DNYPKKMDSN GNFWNYSNQI RYGLDDQDQS LVQSHRLSKF  180
SNLVGNWSIA PPNPDMNHHH LDSQTSDNVS LCSTLAHHYK QNLDDMGSYS EHDLRIKSED  240
FCFNQLGPPS NIGYHNCHGG ESGYINGFPH SPCESSRSFL DIRLTRTLSD IDPSFKPCLK  300
SLSLSKFKKK ELQTTSMTSG TSGMTIEGKN KRCMEVSDEV SKKAKNGSSA TSPAKEVPKA  360
KVRDKITSLQ QIVSPFGKTD TASVLQEAIT YIKFLQEQVK LLSTPYMKNS LKDPWGGWER  420
EDNSKGDAKY LDLRSKGLCL VPVSFTPRSY RESTGADYWS PTYRGCLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529849.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529849.1	0.0	PREDICTED: transcription factor bHLH111
Swissprot	Q9FYJ6	1e-116	BH111_ARATH; Transcription factor bHLH111
TrEMBL	A0A178W315	1e-141	A0A178W315_ARATH; Uncharacterized protein
STRING	XP_010529849.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8055	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	1e-121	bHLH family protein