PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529979.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29307 Da    PI: 8.7509
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-20117171256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Le+ F+++++++ +++  LAk+lgLt rqV vWFqNrRa+ k
  XP_010529979.1 117 RKKLRLSKDQSAILEDTFKEHNTLNPKQKMALAKQLGLTPRQVEVWFQNRRARTK 171
                     788899***********************************************98 PP
2HD-ZIP_I/II128.43e-41117206191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LE++F+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr +l
  XP_010529979.1 117 RKKLRLSKDQSAILEDTFKEHNTLNPKQKMALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEDNRRLQKEVAELR-AL 206
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.0E-29499IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466899.19E-20106174IPR009057Homeodomain-like
PROSITE profilePS5007117.734113173IPR001356Homeobox domain
SMARTSM003895.6E-18115177IPR001356Homeobox domain
PfamPF000463.2E-17117171IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-19117171IPR009057Homeodomain-like
CDDcd000864.52E-17117174No hitNo description
PRINTSPR000313.5E-6144153IPR000047Helix-turn-helix motif
PROSITE patternPS000270148171IPR017970Homeobox, conserved site
PRINTSPR000313.5E-6153169IPR000047Helix-turn-helix motif
SMARTSM003406.4E-25173216IPR003106Leucine zipper, homeobox-associated
PfamPF021832.0E-9173207IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMMMTEEEDM GLSLSLGFAQ NHRPLQLNLK PTSFVSNLHK FPWNQTFVSS AADHQNPPFL  60
GGIDVNRAPS TGDCEEEAGV SSPNSTISST ISGKRSEREG NDHRVSSDEE DGGETSRKKL  120
RLSKDQSAIL EDTFKEHNTL NPKQKMALAK QLGLTPRQVE VWFQNRRART KLKQTEVDCE  180
YLKRCVEKLT EDNRRLQKEV AELRALKLSP QFYGQMAPPT TLIMCPSCER VAGSSNQTAQ  240
RDRSRPLNPW LSGPSRMAKG S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121SRKKLRL
2165173RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00050PBMTransfer from AT4G17460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529979.10.0PREDICTED: homeobox-leucine zipper protein HAT1
SwissprotP466001e-126HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A1J3FTB71e-128A0A1J3FTB7_NOCCA; Homeobox-leucine zipper protein HAT1
STRINGXP_010529979.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-119Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]