PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529984.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 504aa    MW: 55632.2 Da    PI: 6.8301
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA503.9e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_010529984.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11545No hitNo description
CDDcd002023.43E-16651No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003206.5E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139199.5E-8259348IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RGEAEENEDH  60
KVQRLKSISV NKTNETKMVK RKADQENVIV KKVSSGFKKV IDEDASNRSS SGSAISNSES  120
CAQFGSADGS EFTGPAQSNV WDTSVPCKRR TCVGRPKSSS VEKLRKDLYN ILQEQQSSCF  180
SGSSEEDLLF ENETPMVSVE IGHGSVLMRH PYSVAREEES EASSLSVNEA HSHSVKPIGN  240
GAAKAPDFGG QAIQQEQFKR AKSQTEKLQI LGSHGSPLCG IDLKDVFNFD EFVGQFTDDE  300
KQQLMKLLPR IDSVNPPDSL RSMFESSQFE ENFSLFQRLV ADGVFETCSP SGAISEGCKM  360
LKKLALSDLT KSHLGASYYQ LKERKNGTVD SSTTTVRIPN QNPPSNLTAV KRLSERQNKK  420
ISETRAVTRI PKRVMKTKAD QETKEREEDS LPCFSPRSLE VRFESEESWG AFGYEGSCGG  480
SEQDLLLDVP LNGSFPQAEL LHQP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529984.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529984.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLR0F9D00.0R0F9D0_9BRAS; Uncharacterized protein
STRINGXP_010529984.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26