PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010530072.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 524aa MW: 57865.5 Da PI: 4.9785

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.7	4.4e-117	135	508	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+e+L+e+A+avs+gd + a ++ l +++s +gdp+qRl ay++e+L+arl +s+s++ykal+++e + e ++++++++e++P+ kf++ XP_010530072.1 135 LKEVLIEAARAVSNGDIATAFGCIDVLDQMVSVSGDPIQRLGAYMLEGLRARLEGSGSNIYKALKCKEPT---GRELMSYMSVLYEICPYWKFAY 226 5789***************************************************************9...9999999*********** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 aN aIlea++ge r+HiiDf+i qG+Q++ L+q+La+Rp+gpp l +Tg+++++s+ l+ +ge+L+++Ae++gvpfef+ +++ +e XP_010530072.1 227 ASANAAILEAMAGEPRIHIIDFQIAQGTQYVFLIQELAKRPGGPPLLCLTGLDDSQSNyaCGGGLSLVGEKLSRVAESCGVPFEFQDGIVSGCEV 321 **************************************************9999999*********************98999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseer 282 + ++L++kpg a+aVn+ + lh+++desvs++++rd+vL+lvkslsPk+v+++eqe+++n+ +Fl rf+e+++ y+a+f+s+ + pre++er XP_010530072.1 322 QRGHHLEIKPGFAIAVNFPYVLHHMPDESVSIHNHRDRVLQLVKSLSPKIVTLIEQELNTNTLPFLSRFVETMDNYTAMFESIdAGRRPREDKER 416 *******************************************************************************777789999* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373 i E+++++r+ivn++aceg er+erhe l+kWr+r+++aGF + ++s+++a+ ++ +l k ++ yr+ ++g+l+l Wk+r++ ++SaW XP_010530072.1 417 IRAEEQCVARDIVNMIACEGGERVERHELLGKWRMRMMMAGFMQREVSSSVASAVNEVLVKGYDSNYRLSaGSHGALFLLWKGRAMATCSAW 508 ****************************************************998888888677945688899************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.582	109	488	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-114	135	508	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MLYPQLNCSS QFQVTDNNVF SDKETIFTLE SSGILPAYDS PSVSVSSSQS PFSPQASMSC 60 LSDVRLSLDN VSGSPLSGSS SYTYDEAAFK NKIREPEFSL TSGDXKVSDL LDFSPGATNS 120 WSWDELLALT PQLDLKEVLI EAARAVSNGD IATAFGCIDV LDQMVSVSGD PIQRLGAYML 180 EGLRARLEGS GSNIYKALKC KEPTGRELMS YMSVLYEICP YWKFAYASAN AAILEAMAGE 240 PRIHIIDFQI AQGTQYVFLI QELAKRPGGP PLLCLTGLDD SQSNYACGGG LSLVGEKLSR 300 VAESCGVPFE FQDGIVSGCE VQRGHHLEIK PGFAIAVNFP YVLHHMPDES VSIHNHRDRV 360 LQLVKSLSPK IVTLIEQELN TNTLPFLSRF VETMDNYTAM FESIDAGRRP REDKERIRAE 420 EQCVARDIVN MIACEGGERV ERHELLGKWR MRMMMAGFMQ REVSSSVASA VNEVLVKGYD 480 SNYRLSAGSH GALFLLWKGR AMATCSAWIP IPHNHDQMFQ SCRL

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MLYPQLNCSS QFQVTDNNVF SDKETIFTLE SSGILPAYDS PSVSVSSSQS PFSPQASMSC  60
LSDVRLSLDN VSGSPLSGSS SYTYDEAAFK NKIREPEFSL TSGDXKVSDL LDFSPGATNS  120
WSWDELLALT PQLDLKEVLI EAARAVSNGD IATAFGCIDV LDQMVSVSGD PIQRLGAYML  180
EGLRARLEGS GSNIYKALKC KEPTGRELMS YMSVLYEICP YWKFAYASAN AAILEAMAGE  240
PRIHIIDFQI AQGTQYVFLI QELAKRPGGP PLLCLTGLDD SQSNYACGGG LSLVGEKLSR  300
VAESCGVPFE FQDGIVSGCE VQRGHHLEIK PGFAIAVNFP YVLHHMPDES VSIHNHRDRV  360
LQLVKSLSPK IVTLIEQELN TNTLPFLSRF VETMDNYTAM FESIDAGRRP REDKERIRAE  420
EQCVARDIVN MIACEGGERV ERHELLGKWR MRMMMAGFMQ REVSSSVASA VNEVLVKGYD  480
SNYRLSAGSH GALFLLWKGR AMATCSAWIP IPHNHDQMFQ SCRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-47	168	508	36	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269\|PubMed:16680434}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530072.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269\|PubMed:16680434}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010530072.1	0.0	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 13
Swissprot	Q9M0M5	0.0	SCL13_ARATH; Scarecrow-like protein 13
TrEMBL	V4LYG2	0.0	V4LYG2_EUTSA; Uncharacterized protein
STRING	XP_010530072.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM621	28	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17230.1	0.0	SCARECROW-like 13