PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010530124.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ZF-HD

Protein Properties

Length: 225aa MW: 24502.2 Da PI: 7.6298

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	109.9	1.4e-34	45	100	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhA+s+GghavDGCgEfmps geegt ++lkCaACgCHRnFHR+e+++ XP_010530124.1 45 AVRYRECLKNHAVSIGGHAVDGCGEFMPS-GEEGTLESLKCAACGCHRNFHRKETDT 100 69************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-23	46	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.5E-32	46	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.6E-32	47	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.332	48	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.61E-21	148	223	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-31	150	224	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.6E-26	162	219	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDFEEQAEEM EMSGVPHGGY DSLSNSSSGR PRMAGEGATS SGGGAVRYRE CLKNHAVSIG 60 GHAVDGCGEF MPSGEEGTLE SLKCAACGCH RNFHRKETDT TANATANANA VFHHQFPPYY 120 RPPPPGYLHH PHRPFALPVA AADEDDASNP SSSGGGGGGT SRKRFRTKFT AEQKEKMLWF 180 AEKLGWRIQR HDDAAVEQFC AETGVKRNVL KIWMHNNKNT LGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-32	163	220	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530124.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019057686.1	1e-138	PREDICTED: zinc-finger homeodomain protein 2 isoform X1
Refseq	XP_019057687.1	1e-138	PREDICTED: zinc-finger homeodomain protein 2 isoform X2
Swissprot	Q9SB61	1e-92	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	R0FAW7	2e-91	R0FAW7_9BRAS; Uncharacterized protein
STRING	XP_010530124.1	1e-169	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-82	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]