PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530298.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family BBR-BPC
Protein Properties Length: 332aa    MW: 37059.9 Da    PI: 9.7218
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind405.95.1e-12413321301
       GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd g+re  r+k+ +y+ a  + l +++   +q+m++iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn+l+al+++e
  XP_010530298.1   1 MDDGGHREngRHKAdQYKTAqsQWLMQHQpsMKQVMAIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDNALAALQYRE 95 
                     9*****999*****9**95443334444321469************************************************************* PP

       GAGA_bind  89 nsla......salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
                     ns+a      s++p+g+q+++g+k++++ qq++      +q++++++++re e +++ p  +++  a e++k+k   r+k+pke+ka+  +kk++
  XP_010530298.1  96 NSMAtaagmsSSCPPGCQISRGVKHVHHPQQHHMhhhhmTQMGETTYGTRELEPNDTIP--TSPAGAAESAKPK---RGKRPKEPKATPSNKKGS 185
                     **999999999*****************999332357899*************988877..6667777888888...566677777776777788 PP

       GAGA_bind 173 kskkkvkkesader..................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
                     k+++k kkes+d +                  sk+++k ++++ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+ ++
  XP_010530298.1 186 KNQRKIKKESEDLNkimfvkthdyanedevggSKSDWKGQEMGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPN 280
                     8999999999995559******************************************************************************* PP

       GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++tir
  XP_010530298.1 281 KRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIR 332
                     ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.6E-1711332IPR010409GAGA-binding transcriptional activator
PfamPF062171.5E-1051332IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDDGGHRENG RHKADQYKTA QSQWLMQHQP SMKQVMAIIA ERDAAIQERN LAISEKKAAI  60
AERDMAFLQR DTAIAERNNA IMERDNALAA LQYRENSMAT AAGMSSSCPP GCQISRGVKH  120
VHHPQQHHMH HHHMTQMGET TYGTRELEPN DTIPTSPAGA AESAKPKRGK RPKEPKATPS  180
NKKGSKNQRK IKKESEDLNK IMFVKTHDYA NEDEVGGSKS DWKGQEMGLN QVVYDETTMP  240
PPVCSCTGVL RQCYKWGNGG WQSSCCTTTL SMYPLPALPN KRHARVGGRK MSGSAFNKLL  300
SRLAAEGHDL SNPVDLKDHW AKHGTNRYIT IR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530298.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530299.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530300.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530301.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530302.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530305.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530309.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530310.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530311.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530313.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530315.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_010530316.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLB9R8490.0B9R849_RICCO; Uncharacterized protein
STRINGXP_010530298.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6