PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530332.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24034.8 Da    PI: 5.9726
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.29.1e-1322621050
                    HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +  f +R +++  K  ELSvLCd+ v+vi + s+g+ly ++
  XP_010530332.1 22 KAAFQRRVQTLKNKDRELSVLCDIFVCVICYDSDGQLYHWP 62
                    56799999********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003197.3E-111961IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-141995IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.7412165IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGHRLRSTMA HGKPKFQTKA QKAAFQRRVQ TLKNKDRELS VLCDIFVCVI CYDSDGQLYH  60
WPERPEDVRR IAANYRGLSE EDRRKHAVDL NGFLSSEATK ANRASKKPRL APAYPDSDGT  120
VDNLSHDELG VLLSRIDAKL VQFQERQSLV MDHGGRTEKD FEGRNEDVGS EKSATGPRGE  180
ENTDEIDIFG GLEDLDCGFQ GFGFESFGGS SMYI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530332.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530332.11e-159PREDICTED: agamous-like MADS-box protein AGL103
STRINGXP_010530332.11e-159(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.14e-22AGAMOUS-like 103