PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530378.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 217aa    MW: 23024.4 Da    PI: 7.7177
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.81e-373087360
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                    ++ l+cprC+s+ntkfCyynny+lsqPr+fCk+CrryWt+GG+lr+vPvGgg+rk  +
  XP_010530378.1 30 SEPLPCPRCNSANTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDVPVGGGSRKCSS 87
                    57789*************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.0E-323286IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8633387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-213783IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MPSSFEPGHE TRQPGRVQPS TAAFPPPKLS EPLPCPRCNS ANTKFCYYNN YNLSQPRHFC  60
KSCRRYWTHG GTLRDVPVGG GSRKCSSTAA ATKRARSSAN ANANATSSSC LSSSPTKTTT  120
THEPGPRVGP RTGDMVEEVK EGDLVSGYGS FASLLSGYGF DEMGFGYSGY FCGGGGEAVA  180
PATVGGDTWH VDEMEGNGTD SFVWPGLEIS MQGNNVK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530378.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530378.11e-160PREDICTED: dof zinc finger protein DOF1.6-like
SwissprotQ9SX977e-56DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A0D3CNY48e-56A0A0D3CNY4_BRAOL; Uncharacterized protein
STRINGXP_010530378.11e-160(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.12e-41Dof family protein