PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010530401.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 285aa MW: 32479.9 Da PI: 4.3981

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.2e-06	182	219	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +L++l+ + +K + a++L +AveYIk L XP_010530401.1 182 RKEKLGDRITTLQQLVSPF-----GKTDTASVLNEAVEYIKFL 219 67788899******998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.01E-7	160	223	No hit	No description
PROSITE profile	PS50888	11.966	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-11	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0074	181	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-8	184	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MTEEFERTGM FAGTWWNSSN HVCSWKNFDL LDPNSDISLD STSQVSPFEL SSPVPSPPDW 60 NQSTIHGEGY AEAKFNPNTF FEGLFEPHEQ FSSSCPRTEQ TAKPEFLDSL AFFENVLFDD 120 SGVVSIFRES EPEEEHRPCK NFASEINDEK TEDLEGYDEE ESPQLKRPRI ETPSPLPSFK 180 VRKEKLGDRI TTLQQLVSPF GKTDTASVLN EAVEYIKFLH EQVTILSNPP QLKSGAPVQR 240 QPQISDRTSN RECKRQDLRS RGLSLMPISS TFQMNTSDLW NLPFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530401.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010530401.1	0.0	PREDICTED: transcription factor bHLH103-like
Swissprot	Q8VZ22	2e-68	BH103_ARATH; Transcription factor bHLH103
TrEMBL	A0A087GQR8	2e-68	A0A087GQR8_ARAAL; Uncharacterized protein
STRING	XP_010530401.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14712	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	9e-71	bHLH family protein

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743]