PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530481.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 367aa    MW: 39719.1 Da    PI: 8.0607
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.7e-3979138362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  XP_010530481.1  79 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 138
                     6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3466136IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3281136IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54482136IPR003851Zinc finger, Dof-type
PROSITE patternPS01361084120IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVFSSLPVYQ FDQSNWQQQG NQQPGGFTND QNPNHFPLPV PPCMMAPPPP EPQTGGVPAG  60
QAGEPMVERA RLAKIPLPEA ALKCPRCEST NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG  120
ALRNVPVGGG CRRNKRSKSN GGGGTRSKST VVVASDHHQQ QASTPSSSAL SSHTSYSNPN  180
KLLNIGRIPG LASNLSILPP LQGLGDYGTS NIGLDFGEIQ LSNAITGSSS SGGLLDPWRL  240
SLQQAQQFPL LINNMTGTVL EQSSSVLYPL LERNEGINQE QETGYTNQLR SKPLMDMNPG  300
GETQSDDVRA GESNHQNGVD NLSRNLLASI NINSTNDQYP PWVGSNNSWN TDLPGFSSNN  360
SAPGHLL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530481.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935815e-33AB493581.1 Arabidopsis thaliana At2g37590 mRNA for hypothetical protein, partial cds, clone: RAAt2g37590.
GenBankAC0046845e-33AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankBT0300145e-33BT030014.1 Arabidopsis thaliana At2g37590 mRNA, complete cds.
GenBankCP0026855e-33CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530481.10.0PREDICTED: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U11e-114DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLD7LV361e-134D7LV36_ARALL; Obf-binding protein 3
STRINGXP_010530481.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-110OBF-binding protein 3