PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530488.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 240aa    MW: 27860.2 Da    PI: 6.4093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ v++lG ++W++ a+  g++R++k+c++rw +yl
   XP_010530488.1 15 RGPWLEEEDEQLVKFVTLLGERRWDSLAKVSGLKRSGKSCRLRWMNYL 62
                     89********************************************97 PP
2Myb_DNA-binding54.42.9e-1769112247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g++T eE+++++++++++G++ W++Iar+++ gRt++++k++w+++
   XP_010530488.1  69 GPMTREEEKIILQLHALFGNK-WSRIARRLP-GRTDNEIKNYWRTH 112
                      799******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5381062IPR017930Myb domain
SuperFamilySSF466897.49E-2813109IPR009057Homeodomain-like
SMARTSM007172.7E-141464IPR001005SANT/Myb domain
PfamPF002498.5E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-201669IPR009057Homeodomain-like
CDDcd001674.57E-101762No hitNo description
PROSITE profilePS5129426.74463117IPR017930Myb domain
SMARTSM007177.0E-1767115IPR001005SANT/Myb domain
PfamPF002491.3E-1569112IPR001005SANT/Myb domain
CDDcd001678.93E-1270113No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2570116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVGKLYGQDE MFLRRGPWLE EEDEQLVKFV TLLGERRWDS LAKVSGLKRS GKSCRLRWMN  60
YLRPSLKHGP MTREEEKIIL QLHALFGNKW SRIARRLPGR TDNEIKNYWR THVRKKAQVQ  120
SHDHDKIMDS RGDSGEEYLL PKSNETEARI QEYDFDVMKE AANREILESD KGTCGIDGFG  180
ALTSPFETRI SDWVSEISTD HSAGNLVEDR SSSSNGKSNI GSWWFQEHTD LEEFSCSLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-28121171105C-Myb DNA-Binding Domain
1msf_C8e-28121171105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530488.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530488.11e-179PREDICTED: transcription factor MYB57
SwissprotQ9SCP11e-97MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A3P6FGY11e-102A0A3P6FGY1_BRAOL; Uncharacterized protein
STRINGXP_010530488.11e-178(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.13e-94myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]