PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530513.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 374aa    MW: 42614.8 Da    PI: 9.0495
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35301222103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++
  XP_010530513.1  30 FLTKTYQLVDDPTTDQIVSWGDDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCE 115
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_010530513.1 116 IHRRKTA 122
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-3820114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6026119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3427119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3130119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-203053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMMMMESYGG EERMVLTAET EAGKAVPAPF LTKTYQLVDD PTTDQIVSWG DDDSTFVVWR  60
PPEFARDLLP NYFKHNNFSS FVRQLNTYGF RKIVPDRWEF ANEFFKRGEK HLLCEIHRRK  120
TAQSPPPSQP PFHHHQSAPI PFAGGPSFFP FQPRVTLSTA ADDVDLSGAY WCDPPPPRHH  180
HHHSITRSGD NSSAAAAYDR KVTALTEDNE RLRRSNRLLM SELAHMKKLY NDIIYFVQNH  240
VKPATPSNPC PSSLLMKHQK PSSNESIDYY KTSTSRKNNL NIHVMNSSSS PTSNTSQSSI  300
TAIDDSNNGN ESDNDKNNGE IRHESTCRRT KLFGVSIPLM KKRSHQSDHL RVDQTRKSRL  360
VLEKSDLGLN LMTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222612417125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340344KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530513.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7679801e-42JF767980.1 Trifolium alexandrinum microsatellite TaSSR483 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530513.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-135HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD7KPW31e-138D7KPW3_ARALL; Uncharacterized protein
STRINGXP_010530513.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-122heat shock transcription factor B4