PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530616.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 792aa    MW: 86476.4 Da    PI: 4.8705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034383406123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     +kC++C+ +F +++ + +H+ + H
  XP_010530616.1 383 FKCQKCNSTFDTNDAYLQHLISvH 406
                     89*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-5271320IPR016177DNA-binding domain
PROSITE profilePS501579.224383411IPR007087Zinc finger, C2H2
PROSITE patternPS000280385406IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MATMAPEYPP HSTQTLDQLS FIDLSTLTQS ELLALSRCSS VTASAANCFP GDTAVASIDR  60
SAFNESVGSR RQTFCRLGPS SPSSSVHHRS RVAVAGRLSS SSAKSLAVSD AGVADASGDP  120
HHGENRRIIA NLKQSLRNLP EFYDIDFDYV PPCSFTNPTL SLCDGGGERK RKRGRKPKPK  180
PENFKPEIQK PVSVTVAGNE DPETGLESVN KNGVRVDLAA LSTLEDPYGP EIRRRTEGLC  240
GEEELLGFLS SLGGEWCSRR RKRKIVDAGV LGDFLPVGWK LLLALKRKER RAWVYCRRIV  300
SPGGRHLLSC KEVSEYLRSY FESHGEPSRV NHDRSTVHPD GPQSVSQIQN QDANCSEDPR  360
KYHSLMTVSN NDNLKVIQVQ NLFKCQKCNS TFDTNDAYLQ HLISVHQENT KRCKLGSSVE  420
GGQTITNGNR DEGVEQQYDQ LGFQQTIEPT IKDDLGMRIS RMDALIEIAH NSMLETSSAP  480
PTEATERLIM FDELNLVSEG KRSVSDSEHE MISPIGVETE DGLTITNLDQ GFPGEINGNT  540
ATGEKVEILE HVTNFMDIET GSHRSEAFPG KHGFGGAANG TEESVFGNKP ADEICLAIPT  600
ENQEALGVSL ASSSGDGGVN NEQSGLMRMD FRLTNDTAPI QDSIQFQLQP TQNLQTYDNV  660
SKGEDKPFSI NPSNELQLEY MESLKLNFVG GTDMSLVPMG LEENTAMVEE ETAYGSAPQF  720
QSQEVVLGMT GGGSGNNLTT ICMWCGIEFS HVLSDSEPRS DSVGYMCLAC KARISGQMGT  780
PDAHPPPTST IF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167176ERKRKRGRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530616.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530616.10.0PREDICTED: methyl-CpG-binding domain-containing protein 8-like isoform X1
STRINGXP_010530616.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1540723