PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530689.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 232aa    MW: 25494.2 Da    PI: 10.3105
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-222467245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +i+ +s rqvtfskRr+g++KKA+EL++LC+ae+a+i+fs+  k
  XP_010530689.1 24 KIQKESHRQVTFSKRRAGLFKKASELCTLCGAEIAIIVFSPAKK 67
                    68999***********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.9831575IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-301574IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-271687IPR002100Transcription factor, MADS-box
CDDcd002651.78E-321683No hitNo description
PRINTSPR004041.4E-171737IPR002100Transcription factor, MADS-box
PfamPF003191.1E-252471IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-173752IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-175273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTVAAVKNNS KKGSIGRQRI PMAKIQKESH RQVTFSKRRA GLFKKASELC TLCGAEIAII  60
VFSPAKKPFS FGHPNVESVL DRYISKNRSV SFTQTQTQTQ TQTQGSGDSD LNARLTQVLS  120
ELEAEKKKGQ VMEEMRKGRT RKNWWESPLE EMSLEHLMQM KSALEELSKS VLMTKRSLAV  180
MMTAAAAAEA GSAASAAAFG CYETKVTPYH MNMMGSSSGI SSAYSFGYGH GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-161687172Myocyte-specific enhancer factor 2A
3kov_B5e-161687172Myocyte-specific enhancer factor 2A
3kov_I5e-161687172Myocyte-specific enhancer factor 2A
3kov_J5e-161687172Myocyte-specific enhancer factor 2A
3p57_A5e-161687172Myocyte-specific enhancer factor 2A
3p57_B5e-161687172Myocyte-specific enhancer factor 2A
3p57_C5e-161687172Myocyte-specific enhancer factor 2A
3p57_D5e-161687172Myocyte-specific enhancer factor 2A
3p57_I5e-161687172Myocyte-specific enhancer factor 2A
3p57_J5e-161687172Myocyte-specific enhancer factor 2A
5f28_A4e-161587173MEF2C
5f28_B4e-161587173MEF2C
5f28_C4e-161587173MEF2C
5f28_D4e-161587173MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180TKRSLAVM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530689.11e-174PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-78AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLV4LLZ63e-82V4LLZ6_EUTSA; Uncharacterized protein
STRINGXP_010530689.11e-173(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-71AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]