PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010530889.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 178aa    MW: 20222.8 Da    PI: 9.4704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010530889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-17130173249
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
                     gy+GVr+++ +g+++AeIrdp+    r +r++lg+f tae Aa+a++ +
  XP_010530889.1 130 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEAAARAYDLM 173
                     8********.**********83....57*******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-12130173IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-16130177IPR016177DNA-binding domain
SMARTSM003803.8E-16130178IPR001471AP2/ERF domain
PROSITE profilePS5103221.298130178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-24131176IPR001471AP2/ERF domain
PRINTSPR003671.3E-11131142IPR001471AP2/ERF domain
CDDcd000184.48E-22131178No hitNo description
PRINTSPR003671.3E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQYPDNRSEF AGAQHIYPTW IRYPVPDQWP RQEQELSAIV STLKHVISGD ETAPFPCFSD  60
QSTVIGAGMP RSDTDTCQVC KIDGCLGCNY FFPPNQRIEE REGGKQSAGA KRTTQAENGK  120
IRKRRSKKNG YRGVRQRPWG KFAAEIRDPK RATRVWLGTF ETAEAAARAY DLMSVEFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17126178154ATERF1
3gcc_A6e-17126178154ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010530889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010530889.11e-132PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-58EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A078IAL92e-69A0A078IAL9_BRANA; BnaC03g66140D protein
TrEMBLA0A0D3BLE72e-69A0A0D3BLE7_BRAOL; Uncharacterized protein
STRINGXP_010530889.11e-132(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.19e-61redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]