PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010530936.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 264aa MW: 29980.8 Da PI: 9.0429

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.4	2e-51	17	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+e+d+++++PwdLp eke yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+++ XP_010530936.1 17 LPPGFRFHPTDEELVVQYLKRKVLSCPLPA-SIIPEFDVCRADPWDLPGD---LEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTT 107 79**************************.89***********54...46899***************************999988 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfy+g+ p+g++tdW+mheyrl XP_010530936.1 108 rGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 141 57788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-61	11	163	IPR003441	NAC domain
PROSITE profile	PS51005	58.684	17	163	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	18	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MKPMVKPNFV KNGVLRLPPG FRFHPTDEEL VVQYLKRKVL SCPLPASIIP EFDVCRADPW 60 DLPGDLEKER YFFSTREAKY PNGNRSNRAT GSGYWKATGI DKRVVTTRGN QVVGMKKTLV 120 FYRGKPPHGS RTDWIMHEYR LASPPPSSMD RAENWVLCRV FLKKRGNSSK NEDDVVSCGF 180 SRIRCSNSND TDGHNVINNN DDEDDDRKKS RPVLIDFMRK EQSKDSNFAA SSGSDSSVVT 240 AEISLDDVEE SSSCNSFPCF RRKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	15	170	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	15	170	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	15	170	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	15	170	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	15	170	18	174	NAC domain-containing protein 19
3swm_B	2e-52	15	170	18	174	NAC domain-containing protein 19
3swm_C	2e-52	15	170	18	174	NAC domain-containing protein 19
3swm_D	2e-52	15	170	18	174	NAC domain-containing protein 19
3swp_A	2e-52	15	170	18	174	NAC domain-containing protein 19
3swp_B	2e-52	15	170	18	174	NAC domain-containing protein 19
3swp_C	2e-52	15	170	18	174	NAC domain-containing protein 19
3swp_D	2e-52	15	170	18	174	NAC domain-containing protein 19
4dul_A	2e-52	15	170	15	171	NAC domain-containing protein 19
4dul_B	2e-52	15	170	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530936.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010530936.1	0.0	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-112	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1J3K7S7	1e-117	A0A1J3K7S7_NOCCA; NAC transcription factor 29 (Fragment)
STRING	XP_010530936.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-109	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]