PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010530996.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WOX

Protein Properties

Length: 249aa MW: 27688.7 Da PI: 5.5892

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010530996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps++++++++++l +++e++V++WFqNrRa+ k+ XP_010530996.1 93 RQRWTPTPVQLQILEQIFDQgTGTPSKQKIKDITAELsqhgHISETNVYNWFQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	104.5	6.7e-34	92	155	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq XP_010530996.1 92 ARQRWTPTPVQLQILEQIFDQGTGTPSKQKIKDITAELSQHGHISETNVYNWFQNRRARSKRKQ 155 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-17	87	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.69	89	154	IPR001356	Homeobox domain
SMART	SM00389	5.1E-15	91	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.4E-18	91	156	IPR009057	Homeodomain-like
Pfam	PF00046	4.1E-19	93	153	IPR001356	Homeobox domain
CDD	cd00086	2.82E-14	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMEWDNQQQP SNHATPNLHG IDVNGGGGMY VKVMTDEQLE TLRKQIAIYA TICERLVEMH 60 KTLTAQQDLA GGRLGGLYSD PLISSAGHKM SARQRWTPTP VQLQILEQIF DQGTGTPSKQ 120 KIKDITAELS QHGHISETNV YNWFQNRRAR SKRKQQGAGS SNNNNNGESE VETEVESSND 180 KRTRPESLVG AATTTPRPED LCFQSPEMSS ELHLLGVLSN PRDENLAAKM GLSESYNLYD 240 HVEDYSMAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010530996.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010530996.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-134	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	D7MCZ4	1e-136	D7MCZ4_ARALL; Homeobox-leucine zipper protein
STRING	XP_010530996.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-131	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]