PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531040.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 338aa    MW: 37549.1 Da    PI: 6.7906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-08193239555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RRd+i +++  L++l+P +    +    Ka +L + ++Y++sLq
  XP_010531040.1 193 HSLAERARRDKISKKMKCLQDLVPGC----NNVTGKAGMLDEIINYVQSLQ 239
                     999**********************9....67799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16186256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-8186243No hitNo description
PROSITE profilePS5088814.754188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17189254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLEGLVSPES LYLSSMDMSA LKWLQHQQQV VSQNRDKGTS PELLQFHGSN GRELRRVESY  60
LGNDDELQTF SHFQMVDSVF GSNHNTGLVP LHDAIDGCIS RTNSCRMEPV DTTGVMLKRN  120
GENRGTAMNK RKSEIKTGEE NTDKKIKMEG EAESSMKGRS NISNTEASSD TSDIQKLDYI  180
HVRARRGQAT DRHSLAERAR RDKISKKMKC LQDLVPGCNN VTGKAGMLDE IINYVQSLQR  240
QVEFLSMKLS VLNPAIDFDI DALSAKQFQA CFSNLGTISK PLAMAGQASF PLQHQGSLDF  300
PFTVPNQESS LNAKSQPSSS WETPSGSLYN ASSIDFHY
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531040.10.0PREDICTED: transcription factor HBI1-like
SwissprotQ9ZPW31e-126HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A1J3HJB11e-135A0A1J3HJB1_NOCCA; Transcription factor HBI1
STRINGXP_010531040.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-129bHLH family protein