PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531168.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 547aa    MW: 60012.8 Da    PI: 5.07
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3168.3e-971845462374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e L++++++v+s++l+laq +Larl+++ +sp+g+p+qR+a+yf+eAL + l++     +   p++ +s+++ ++++ a+k fs +sPi+ fsh
  XP_010531168.1 184 IEDLIRVVDCVQSEELQLAQVVLARLNQRlRSPSGRPLQRAAFYFKEALGSVLTG-----STRNPTRLSSWSDIVQRIRAYKEFSGISPIPLFSH 273
                     678*************************99*************************.....6667999999999********************** PP

            GRAS  96 ltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqaIl++++ +     vH++Df+i+ G+Q+++L++++a+++ e+   lR+T+v+++e   + e++ ++e+La+fA+ l+++f++++++++++
  XP_010531168.1 274 FTANQAILDSLNWQsssPFVHVVDFEIGFGGQYASLMREIAEKSsENGGFLRVTAVVPEE--FAVETRLVKENLAQFAADLKIRFQIEFVLMRTF 366
                     ***********98766689************************955666*********66..889999*************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpre 278
                     e+l+++++r+ +gE ++V l+ +++r l   + +    +++++ ++++s kvvv+v+ e  +++ +s+sF ++f+  le+y++++dsl+a +p+ 
  XP_010531168.1 367 EMLSFKAIRFVEGERTVVLLSPAIFRRL---TGI----PSFVNDLRRVSQKVVVFVDGEgwTETaGSGSFRREFVGLLEFYTMVLDSLDAAVPPG 454
                     ***************************9...445....55*******************765667999*************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + +++ +E+++l+++i+++v ++ a+    +   ++Wre++ +aG++++pls++a+ qa++ll+k +++g++v ++++ lvl+W++r+Lv++SaW
  XP_010531168.1 455 EWTKKIIEAFVLRPRISEAVEAAAAR----NAGEMTWREAFCAAGMRQIPLSQFANFQAECLLEKAQVRGFHVAKRQADLVLCWHGRALVATSAW 545
                     ********************998886....889999*********************************************************** PP

            GRAS 374 r 374
                     r
  XP_010531168.1 546 R 546
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.565157526IPR005202Transcription factor GRAS
PfamPF035142.9E-94184546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MRVPPSSPQD NQPSDTKSAS YSNTTTNQAD NTNSTTAVNA GRTLGFGEPT SVLDLRGSPS  60
PAAIAEKPPV EVASLVSVGG GNTGQVSEQF PLDDHVMRSM DWDSIMRELE LDDDSAPALK  120
TSFAAAAVPT HYGVDSQLHG FPDQLHPVDF GSSEVYSGNP VGVGYGLNSV DGSDGFVNGG  180
FDFIEDLIRV VDCVQSEELQ LAQVVLARLN QRLRSPSGRP LQRAAFYFKE ALGSVLTGST  240
RNPTRLSSWS DIVQRIRAYK EFSGISPIPL FSHFTANQAI LDSLNWQSSS PFVHVVDFEI  300
GFGGQYASLM REIAEKSSEN GGFLRVTAVV PEEFAVETRL VKENLAQFAA DLKIRFQIEF  360
VLMRTFEMLS FKAIRFVEGE RTVVLLSPAI FRRLTGIPSF VNDLRRVSQK VVVFVDGEGW  420
TETAGSGSFR REFVGLLEFY TMVLDSLDAA VPPGEWTKKI IEAFVLRPRI SEAVEAAAAR  480
NAGEMTWREA FCAAGMRQIP LSQFANFQAE CLLEKAQVRG FHVAKRQADL VLCWHGRALV  540
ATSAWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-2518954525378Protein SCARECROW
5b3h_A8e-2518954524377Protein SCARECROW
5b3h_D8e-2518954524377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531168.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531168.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1J3DDU30.0A0A1J3DDU3_NOCCA; Scarecrow-like protein 15 (Fragment)
STRINGXP_010531168.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]