PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531178.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 202aa    MW: 23458.4 Da    PI: 6.8009
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.66.1e-2051104457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  F +++++  e++ +LA++lgL+ +qV vWFqNrRa++k+
  XP_010531178.1  51 KRKLSEEQVRMLEMSFGNEHKLESERKDRLASELGLDPCQVAVWFQNRRARWKN 104
                     45899***********************************************95 PP
2HD-ZIP_I/II117.38.4e-3850141293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eqv++LE+sF +e+kLe+erK +la+eLgl+p qvavWFqnrRAR+k+k+lE+++++Lk+ +++++ ++++Le+ev +L+e+l e
  XP_010531178.1  50 RKRKLSEEQVRMLEMSFGNEHKLESERKDRLASELGLDPCQVAVWFQNRRARWKNKKLEEEFNKLKTLHENVVVQKCHLESEVIQLKEQLYE 141
                     8***************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.30945105IPR001356Homeobox domain
SMARTSM003891.4E-1948109IPR001356Homeobox domain
SuperFamilySSF466891.71E-1750112IPR009057Homeodomain-like
CDDcd000863.01E-1550106No hitNo description
PfamPF000462.7E-1751104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-2052112IPR009057Homeodomain-like
PRINTSPR000312.9E-57685IPR000047Helix-turn-helix motif
PROSITE patternPS00027080103IPR017970Homeobox, conserved site
PRINTSPR000312.9E-585101IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDDHMELISQ LYHGGFSQIA PRQGEAKPRR SRRRKNKANA EGSSNGGMMR KRKLSEEQVR  60
MLEMSFGNEH KLESERKDRL ASELGLDPCQ VAVWFQNRRA RWKNKKLEEE FNKLKTLHEN  120
VVVQKCHLES EVIQLKEQLY EAEREIQRLA ERAVEGVSSN SPTSSNDAPF PGDFQVDNDY  180
DDLIYAPPHG YTAGMEWMIM YV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13252RRKNKANAEGSSNGGMMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531178.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531178.11e-151PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-77ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLD7MBE62e-78D7MBE6_ARALL; Homeobox-leucine zipper protein ATHB-40
STRINGXP_010531178.11e-150(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.16e-64homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]