PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531191.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TALE

Protein Properties

Length: 746aa MW: 81312.2 Da PI: 7.1754

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	539	576	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_010531191.1 539 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 576 664459******************************88 PP
2	BELL	123.6	8e-40	397	468	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai++q+ XP_010531191.1 397 DRIEHQRRKVKLLSMLEEVDRRYSHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAISGQL 468 589******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.6E-84	326	466	IPR006563	POX domain
Pfam	PF07526	4.8E-52	331	465	IPR006563	POX domain
PROSITE profile	PS50071	12.568	517	580	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	520	584	IPR001356	Homeobox domain
CDD	cd00086	3.44E-12	520	581	No hit	No description
SuperFamily	SSF46689	3.51E-17	522	587	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-29	523	586	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	537	576	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MGIAKTPTIF PSRHQPFIKN FNNNNNSSSS DLSMSQDYHH RHHHHHHQGI FTFSNGFDRS 60 SSTLTHQQQP PQQVGIDEDS AAGAEIPVYE TTGMLSEMFT FPGGGAASGE LLDQSLPSSY 120 NPSNSVTTRQ LLEQQHRHHH QNIPAINVAD SATAAAAAMQ LFSMNPPPPP PSQRSPSPSP 180 QDSTTTNNNN SSTLHMLLPN HHQAYTTAFG NNNNNAIQQQ LHQQFTWSDH QHHGDGAEIG 240 AVHVEGGQGL SLSLSSSLEA AAAAKAEEYR NIYYGSNQGV DGNSSSSNTS AHQYNHFKGL 300 LSSSHHQQHQ VIGHFASPSA SSSFSIAGIN ILRNSKYTKA AQELLEEFCS VGRGHFKKNK 360 FGNRNSSNPT TSGGAGGGGS SSSAVATKDH PPLSAADRIE HQRRKVKLLS MLEEVDRRYS 420 HYCEQMQMVV NSFDLVMGYG AAVPYTALAQ KAMSRHFRCL KDAISGQLRH PSISQLGEKD 480 VAGSSSGLTK GETPRLRLLE QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRAWLFE 540 HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQEA KEEEEEEEEE 600 TSQQQRRKQQ TNNNTKPNNN NESNSTVVQT NAQTPTPSTT ATTTVTAAAA ATGHHQRSEI 660 NALESDPSLL LPPSSSSAAA FPVAVAAGGF GTANANAGDD FGNPSGGVMR FGTNPAGDVS 720 LTLGLRHAGN MPDKNPSFSI RDFGGF

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MGIAKTPTIF PSRHQPFIKN FNNNNNSSSS DLSMSQDYHH RHHHHHHQGI FTFSNGFDRS  60
SSTLTHQQQP PQQVGIDEDS AAGAEIPVYE TTGMLSEMFT FPGGGAASGE LLDQSLPSSY  120
NPSNSVTTRQ LLEQQHRHHH QNIPAINVAD SATAAAAAMQ LFSMNPPPPP PSQRSPSPSP  180
QDSTTTNNNN SSTLHMLLPN HHQAYTTAFG NNNNNAIQQQ LHQQFTWSDH QHHGDGAEIG  240
AVHVEGGQGL SLSLSSSLEA AAAAKAEEYR NIYYGSNQGV DGNSSSSNTS AHQYNHFKGL  300
LSSSHHQQHQ VIGHFASPSA SSSFSIAGIN ILRNSKYTKA AQELLEEFCS VGRGHFKKNK  360
FGNRNSSNPT TSGGAGGGGS SSSAVATKDH PPLSAADRIE HQRRKVKLLS MLEEVDRRYS  420
HYCEQMQMVV NSFDLVMGYG AAVPYTALAQ KAMSRHFRCL KDAISGQLRH PSISQLGEKD  480
VAGSSSGLTK GETPRLRLLE QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRAWLFE  540
HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQEA KEEEEEEEEE  600
TSQQQRRKQQ TNNNTKPNNN NESNSTVVQT NAQTPTPSTT ATTTVTAAAA ATGHHQRSEI  660
NALESDPSLL LPPSSSSAAA FPVAVAAGGF GTANANAGDD FGNPSGGVMR FGTNPAGDVS  720
LTLGLRHAGN MPDKNPSFSI RDFGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	526	584	5	63	Homeobox protein Meis2
3k2a_B	2e-16	526	584	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531191.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531191.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	0.0	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	R0GH26	0.0	R0GH26_9BRAS; Uncharacterized protein
STRING	XP_010531191.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-170	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]