PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531228.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 368aa MW: 40883.6 Da PI: 6.0826

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.8	3.7e-31	221	275	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+peLH++F++a++ LGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYR++ XP_010531228.1 221 QRRRWSPELHRKFIDALQLLGGSQAATPKQIRELMQVEGLTNDEVKSHLQKYRIH 275 8****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.315	217	277	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-28	217	278	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.24E-17	218	278	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-25	221	275	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	222	273	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MVETDSDRRM DLNLDLGVYC LPKPLSEFLH EVSLIKDCPS TLSEIGGLVD RLEEERRKID 60 AFKRELPLCM LLLNEAIGRL KKGATRSAEK RDGSAREGSV ASIRKFDDGG GAKVENDKKN 120 WMSSAQLWIS NSDSQLQSRN EEDEEEEEEE EDRSLTQNPF PNCNFANNGG AFLPFMRPCG 180 SYHPSPPPLT LMTPASDTVV NCRVDRRQLS KTLSQQQKKE QRRRWSPELH RKFIDALQLL 240 GGSQAATPKQ IRELMQVEGL TNDEVKSHLQ KYRIHVRKHP KTIFAAAETA KTTGGSGRIQ 300 CKGSDLESRG ISHSQSDSPQ GPLARRGASS NGGHSSEAAE GEDDEEAKSD GQSCKNASNA 360 EELVHLQL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MVETDSDRRM DLNLDLGVYC LPKPLSEFLH EVSLIKDCPS TLSEIGGLVD RLEEERRKID  60
AFKRELPLCM LLLNEAIGRL KKGATRSAEK RDGSAREGSV ASIRKFDDGG GAKVENDKKN  120
WMSSAQLWIS NSDSQLQSRN EEDEEEEEEE EDRSLTQNPF PNCNFANNGG AFLPFMRPCG  180
SYHPSPPPLT LMTPASDTVV NCRVDRRQLS KTLSQQQKKE QRRRWSPELH RKFIDALQLL  240
GGSQAATPKQ IRELMQVEGL TNDEVKSHLQ KYRIHVRKHP KTIFAAAETA KTTGGSGRIQ  300
CKGSDLESRG ISHSQSDSPQ GPLARRGASS NGGHSSEAAE GEDDEEAKSD GQSCKNASNA  360
EELVHLQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-15	222	273	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-15	222	273	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-15	222	273	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-15	222	273	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531228.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531228.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	F4JRB0	1e-111	HHO5_ARATH; Transcription factor HHO5
TrEMBL	R0GZX2	1e-117	R0GZX2_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010531228.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-103	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]