PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531313.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRF

Protein Properties

Length: 527aa MW: 56577.1 Da PI: 8.1507

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2.1e-24	214	258	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_010531313.1 214 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKHVEG 258 79****************************************985 PP
2	QLQ	54.7	3e-19	147	183	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll++++k XP_010531313.1 147 GPFTLTQWAELEQQALIYKYITANVPVPSSLLLPLKK 183 59********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.7E-11	147	183	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.736	148	183	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.4E-13	148	181	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.747	214	258	IPR014977	WRC domain
Pfam	PF08879	1.0E-20	215	257	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MDLGVRFQGS VSGHENGAPT QSEPGSGFAK QDRSGFDGED YWRSPKLART EDFLGCKTLS 60 FHQGVPLLRS TSLVSSDPRR QEHMLSFSSS DKSEAPEFNK DGGLDNRISV SPYLQQFASS 120 YSRDAGYGAG GGVMNTNMHG NSTGVRGPFT LTQWAELEQQ ALIYKYITAN VPVPSSLLLP 180 LKKSFYPYAL GSFPPNSFGW GGAFHLGFSG GSMDPEPGRC RRTDGKKWRC SRDAVPDQKY 240 CERHINRGRH RSRKHVEGHS GHTPAAGSTA ASKVVTPKPS SDVVALASDS LSIGGHSNPS 300 PDSFPNRVQN LRGVSSVFPS TMSLQPKEPP LAHQKQENPF EFGIISSDSL LNPPQKSSYM 360 NSAESIGSDM DFSSQEKHPS DPNIVSWPRE LKSDWTQLSM SIPMASTELE SSAQDKLALS 420 PLRLTREFDP TIQMGLGVNT GILEQAKKAK NWIPVSWGSS LGGPLGEMLN SPKLGSSPTG 480 VLQKSTFCSL SNGSSGSSPV NKNGAGVGLC EDLLGPTLLS SSSAPSM

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MDLGVRFQGS VSGHENGAPT QSEPGSGFAK QDRSGFDGED YWRSPKLART EDFLGCKTLS  60
FHQGVPLLRS TSLVSSDPRR QEHMLSFSSS DKSEAPEFNK DGGLDNRISV SPYLQQFASS  120
YSRDAGYGAG GGVMNTNMHG NSTGVRGPFT LTQWAELEQQ ALIYKYITAN VPVPSSLLLP  180
LKKSFYPYAL GSFPPNSFGW GGAFHLGFSG GSMDPEPGRC RRTDGKKWRC SRDAVPDQKY  240
CERHINRGRH RSRKHVEGHS GHTPAAGSTA ASKVVTPKPS SDVVALASDS LSIGGHSNPS  300
PDSFPNRVQN LRGVSSVFPS TMSLQPKEPP LAHQKQENPF EFGIISSDSL LNPPQKSSYM  360
NSAESIGSDM DFSSQEKHPS DPNIVSWPRE LKSDWTQLSM SIPMASTELE SSAQDKLALS  420
PLRLTREFDP TIQMGLGVNT GILEQAKKAK NWIPVSWGSS LGGPLGEMLN SPKLGSSPTG  480
VLQKSTFCSL SNGSSGSSPV NKNGAGVGLC EDLLGPTLLS SSSAPSM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:22419826, ECO:0000269\|PubMed:22751317}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531313.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531313.1	0.0	PREDICTED: growth-regulating factor 1
Swissprot	O81001	0.0	GRF1_ARATH; Growth-regulating factor 1
TrEMBL	V4M1W3	0.0	V4M1W3_EUTSA; Uncharacterized protein
STRING	XP_010531313.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	0.0	growth-regulating factor 1

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]