PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531324.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 316aa    MW: 36172.4 Da    PI: 7.083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12146192455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A+++Ik+Lq
  XP_010531324.1 146 DHVLAERKRREKLTQRFVALSAMVPGL-----KKMDKASVLGDAIKHIKHLQ 192
                     58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-17146208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17147211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10147192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-11147195No hitNo description
SMARTSM003532.6E-15148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAATMDLPST KWFSELEMEE YNIIQLYHMN PLVGDDTTLP QSIDIAEYFD GSSYELIEEK  60
PSNALKTHHI QPKILSSPPQ KRQPSTQILS FENGGFDTND LSNYPIFIPK EAEIRKLEVE  120
TDQSRYGRRG TKRAHQSTRI QPHGQDHVLA ERKRREKLTQ RFVALSAMVP GLKKMDKASV  180
LGDAIKHIKH LQDRVKEFEE EKKERSMESV ALIKKSRLVL DEEDDKSDSS NSALPEIEVR  240
VSGKDAMIKI LCEKQKGHAT KILSEIEKLH LCILNNNILP FGPTLDITVI ARKERDFDMT  300
TVDVVKNLRL AFSKFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14146202864Transcription factor MYC2
5gnj_B1e-14146202864Transcription factor MYC2
5gnj_E1e-14146202864Transcription factor MYC2
5gnj_F1e-14146202864Transcription factor MYC2
5gnj_G1e-14146202864Transcription factor MYC2
5gnj_I1e-14146202864Transcription factor MYC2
5gnj_M1e-14146202864Transcription factor MYC2
5gnj_N1e-14146202864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531324.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531324.10.0PREDICTED: transcription factor bHLH18 isoform X1
SwissprotQ9T0721e-104BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1J3E2V31e-114A0A1J3E2V3_NOCCA; Transcription factor bHLH18 (Fragment)
STRINGXP_010531324.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-98bHLH family protein