PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531479.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 189aa    MW: 20811.4 Da    PI: 5.8799
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC++C ++ H
  XP_010531479.1  4 LCDACESTAAILFCAADEAALCHSCDEKVH 33
                    6******99******************998 PP
2zf-B_box27.94.9e-095291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    ++++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_010531479.1 52 DAPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                    679***************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000215.43E-6345No hitNo description
SMARTSM003361.3E-5447IPR000315B-box-type zinc finger
PfamPF006431.6E-5442IPR000315B-box-type zinc finger
SMARTSM003361.1E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1015196IPR000315B-box-type zinc finger
PfamPF006435.8E-75291IPR000315B-box-type zinc finger
CDDcd000211.21E-75496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRILCDACES TAAILFCAAD EAALCHSCDE KVHMCNKLAS RHVRVGLADP SDAPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKCGS VGLQGKEQNR  120
ARENPQEPKS NAEPDGKVES KLFDPNANPQ RIHDPASNNQ ERGIDVNNMN NHEPGSLVPV  180
GPFQREPEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531479.11e-138PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM52e-96BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A061E6F94e-94A0A061E6F9_THECC; B-box type zinc finger family protein
TrEMBLD7MFQ57e-95D7MFQ5_ARALL; Zinc finger (B-box type) family protein
STRINGXP_010531479.11e-137(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.18e-99DBB family protein