PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531582.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 236aa MW: 25725.2 Da PI: 7.7181

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	73	5.8e-23	5	101	9	97
DUF260 9 rrkCakd...Cvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 r +C+++ C+l+p++ +++q +++ +v+k+FG++ ++++++++p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ e++ XP_010531582.1 5 RHECESNelqCILRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPDSQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAMETV 99 5667765555*****9999777889**************************************************************9998 PP DUF260 96 ll 97 l+ XP_010531582.1 100 LR 101 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.207	1	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-18	5	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MCTPRHECES NELQCILRPC LQWIESAEAQ GHATVFVAKF FGRAGLMSFI SSVPDSQRPA 60 LFQSLLFEAC GRTVNPVNGA VGLLWTGNWH VCQAAMETVL RGGSLRPIPE LLSTGSPPPF 120 MATDQASKIS TSMWRLPRKD GSTDDNPSHH CRFSRSKAAT EKRKRQKPDQ PAGSNLDLHL 180 NHGLPSAAPC KEVITGDRPG TPSMISEESV TTSCWDGGFG DQYGNGGERK LLNLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531582.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR076542	1e-84	KR076542.1 Boehmeria nivea lateral organ boundaries domain protein (LBD16) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531582.1	1e-177	PREDICTED: LOB domain-containing protein 39
Swissprot	Q9SZE8	1e-90	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A2C9UVP8	5e-91	A0A2C9UVP8_MANES; Uncharacterized protein
STRING	XP_010531582.1	1e-176	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-88	LOB domain-containing protein 39