PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531597.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 147aa MW: 16417.9 Da PI: 4.4086

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	44.2	3.8e-14	77	112	23	58
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Y++C+ ++C+vkk++e+++ +p++v +tYeg+Hnh XP_010531597.1 77 HYHKCSNPNCSVKKRIEKDTANPDYVLTTYEGKHNH 112 7*********************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-12	76	115	IPR003657	WRKY domain
Pfam	PF03106	1.6E-8	76	112	IPR003657	WRKY domain
SMART	SM00774	1.9E-5	77	114	IPR003657	WRKY domain
SuperFamily	SSF118290	1.29E-10	77	115	IPR003657	WRKY domain
PROSITE profile	PS50811	14.642	78	115	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MNFPSSPNPN FTELDEIFNF DLDFSSVSDV LQMIGDEINR EDSPSSTWSI NSSEKVPPNG 60 ASPPASMATS FTGLEMHYHK CSNPNCSVKK RIEKDTANPD YVLTTYEGKH NHGSPSVVYC 120 DPDDEIEFTS RNSWRFQNNS SLSRSAP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531597.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531597.1	1e-105	PREDICTED: uncharacterized protein LOC104807869
TrEMBL	A0A1J3F278	2e-37	A0A1J3F278_NOCCA; Putative WRKY transcription factor 59
TrEMBL	A0A1J3IP90	2e-37	A0A1J3IP90_NOCCA; Putative WRKY transcription factor 59
STRING	XP_010531597.1	1e-105	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13835	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21900.1	6e-29	WRKY DNA-binding protein 59