PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531658.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 269aa    MW: 29833.3 Da    PI: 8.5075
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-18136190256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k q  +Lee F+ +++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_010531658.1 136 RKKLRLSKGQSAVLEETFKDHNTLNPRQKLALAKQLGLRPRQVEVWFQNRRARTK 190
                     7788999**********************************************98 PP
2HD-ZIP_I/II126.31.3e-40136226192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlsk q+++LEe+F+ +++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +lk
  XP_010531658.1 136 RKKLRLSKGQSAVLEETFKDHNTLNPRQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEAAELR-ALK 226
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-322109IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.7E-17108193IPR009057Homeodomain-like
SuperFamilySSF466893.21E-18117193IPR009057Homeodomain-like
PROSITE profilePS5007116.925132192IPR001356Homeobox domain
SMARTSM003892.2E-15134196IPR001356Homeobox domain
PfamPF000461.8E-15136190IPR001356Homeobox domain
CDDcd000868.10E-15136193No hitNo description
PRINTSPR000311.7E-5163172IPR000047Helix-turn-helix motif
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5172188IPR000047Helix-turn-helix motif
PfamPF021833.7E-10192226IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.3E-24192235IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMVEKDDLGL SLSLGFPQNQ TNPKLNPSPS VSSPSSPFGF LGKSSWNGSF NSSAPNSEPF  60
RVRTRTFIRS IDVNRAPSTS EAAECDDEAG VSSPNSTVSS ASGKRSERET NGSEDHDTDP  120
PCSRGISDEE DGDTSRKKLR LSKGQSAVLE ETFKDHNTLN PRQKLALAKQ LGLRPRQVEV  180
WFQNRRARTK LKQTEVDCEF LRRCCENLTE ENRRLQKEAA ELRALKTSPH LCMHMPPPTT  240
LTLCPSCHRL SSAVNSPWCP GAPISHRLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140SRKKLRL
2184192RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531658.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531658.10.0PREDICTED: homeobox-leucine zipper protein HAT4
SwissprotQ054661e-114HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLA0A2N9F0H61e-122A0A2N9F0H6_FAGSY; Uncharacterized protein
STRINGXP_010531658.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-93homeobox protein 2
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  4. Müller-Moulé P, et al.
    YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
    PeerJ, 2016. 4: p. e2574
    [PMID:27761349]
  5. Ivarson E, et al.
    Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
    Front Plant Sci, 2016. 7: p. 2032
    [PMID:28119714]
  6. Kasulin L, et al.
    A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
    Mol. Ecol., 2017. 26(13): p. 3389-3404
    [PMID:28316114]
  7. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]