PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531700.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SRS

Protein Properties

Length: 333aa MW: 37088.9 Da PI: 9.3431

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	28.1	5.8e-09	30	95	5	69
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.ae 69 + +C +CGn a+ C ++ C+ CC + C hv +a + + q++l++ +++++ ++ a+ XP_010531700.1 30 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKAAAGSAEKAQVQNTLSSEQKSSEGTSgAT 95 568********************************8887777777776666666555544433222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.5E-7	32	93	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAAPSPSLSS NGLAAAAATP PKTTLRGLNK PKCIQCGNVA RSRCPFQSCK GCCSRAENPC 60 PIHVLKAAAG SAEKAQVQNT LSSEQKSSEG TSGATTRLSS IRQLSSNFAQ FNKLNRPRKP 120 LTIKDAVALN EWRFSKLKEY RDRNIGEENE AFDRYMKNVN LLEEVFSLTS VPEENPGTTT 180 ELNDDEKTIS CLKLRLRSDP ARAKRFRERI REVVNEGLAQ LQKPGKDDRV GNQDEQPERR 240 GKRAKREERA SALSEIIDKV SKARTEEDLK SCTEMKSKLY HRHPTPSLEV SGDDPSEKNK 300 SLPGFVRRIE TGEETLKRID EQFCSLEQIG GLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531700.1	0.0	PREDICTED: uncharacterized protein LOC104807943
TrEMBL	V4KQH0	1e-142	V4KQH0_EUTSA; Uncharacterized protein
STRING	XP_010531700.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-125