PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010531725.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LSD

Protein Properties

Length: 153aa MW: 15796.4 Da PI: 7.9166

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010531725.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.2	1.4e-13	34	58	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_010531725.1 34 CSGCRNLLLYPVGATSVCCAVCNAV 58 ************************9 PP
2	zf-LSD1	46.7	5.2e-15	73	97	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_010531725.1 73 CGGCHTLLMYIRGATSVQCSCCHTV 97 ************************9 PP
3	zf-LSD1	39	1.3e-12	111	135	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V XP_010531725.1 111 CGNCRMLLMYQYGARSVKCAVCTFV 135 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-12	31	61	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-10	34	58	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.5E-15	70	99	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-12	73	97	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-11	108	136	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	111	135	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MPVPLAPYPS PPTPYAPPPP PATNGGGGQS QLVCSGCRNL LLYPVGATSV CCAVCNAVTA 60 VPPPGTEMAQ LVCGGCHTLL MYIRGATSVQ CSCCHTVNLA LEANQVAHVN CGNCRMLLMY 120 QYGARSVKCA VCTFVTPVGA STTTTTSDQK FNI

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010531725.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010531725.1	1e-106	PREDICTED: protein LOL1-like
Swissprot	Q93ZB1	7e-80	LOL1_ARATH; Protein LOL1
TrEMBL	A0A0D3CGN5	2e-85	A0A0D3CGN5_BRAOL; Uncharacterized protein
STRING	XP_010531725.1	1e-105	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7293	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-62	lsd one like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]