PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531767.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 222aa    MW: 25009.8 Da    PI: 8.5136
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP64.73.4e-20111322132
             TCP  22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaksaa.kskksqksaasalnlak 112
                     +Rls  +a +fF Lqd LGfdk s ti WLl  ++++i +l g+ s + +    ++++  ++n++ +   ++ ++    +++++++  +     k
  XP_010531767.1   1 MRLSTVVAHKFFHLQDLLGFDKGSMTIAWLLSVSEASIMQLLGSVSAPRHGG--GQEHGYVGNETVEleaQEGTAGIrRTRRRTTKIVQRPTRTK 93 
                     8*******************************************55555333..33333333333334222233333233333444444455566 PP

             TCP 113 esrakarararertrekmri 132
                     esr++ar rarert  k r+
  XP_010531767.1  94 ESRNEARRRARERTMTKRRN 113
                     **************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136917.826141IPR017887Transcription factor TCP subgroup
PfamPF036346.4E-151112IPR005333Transcription factor, TCP
PROSITE profilePS513709.26893110IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRLSTVVAHK FFHLQDLLGF DKGSMTIAWL LSVSEASIMQ LLGSVSAPRH GGGQEHGYVG  60
NETVELEAQE GTAGIRRTRR RTTKIVQRPT RTKESRNEAR RRARERTMTK RRNIRSGSAF  120
GMMSGAFCHR QETNSDDSGR QLGSHGTSKE TQEDLCPNWS QETRLDMEEQ SQEQGLLNFL  180
ECQMDALRSI EKFLGIDSES SYSSISGDST RKNSEESHRV LP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531767.11e-164PREDICTED: transcription factor TCP12
RefseqXP_019056460.11e-162PREDICTED: transcription factor TCP12-like
STRINGXP_010531767.11e-163(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-14TCP domain protein 12