PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531809.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 92aa    MW: 10620.9 Da    PI: 8.5286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.7e-0620591654
                    HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    i +   +Lr  lP+ + + +s K+s + +L+++++YI++L
  XP_010531809.1 20 IVDLVTKLRHFLPEiRDRRRSDKVSASKVLQETCNYIRNL 59
                    5666789*******88899*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.401459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-71977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-71975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQSS SGSRISDDQI VDLVTKLRHF LPEIRDRRRS DKVSASKVLQ ETCNYIRNLH  60
REVDNLSERL SQLLDSVDED SAEAAVIRSL FM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531809.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531809.12e-58PREDICTED: transcription factor PRE5-like
SwissprotQ9LJX14e-50PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A178V8X21e-47A0A178V8X2_ARATH; PRE5
STRINGXP_010531809.16e-58(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-43bHLH family protein