PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532203.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24819.6 Da    PI: 9.2008
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+ nr+vt+skRr+g++KKA E+ vLCda+ a+iif+s+gk++ey+s
  XP_010532203.1  9 KRIENTNNRHVTYSKRRKGMMKKAREITVLCDAKLALIIFASSGKMHEYCS 59
                    79***********************************************96 PP
2K-box782.3e-2671168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq+  gk+l+++k+esl++e++++kk ++nLq e+R+l+Ged++s+++k+L  +e+ Le++l ++R++++e l+e  ++ ++ e+e+++ n +L+
  XP_010532203.1  71 YQQILGKRLWDEKHESLSNEMDRIKKDNDNLQIELRRLKGEDIQSMNYKDLIAIESVLETGLVHVRNRQMECLRELKRREKMIEEENRQLNFRLQ 165
                     78888999*****************************************************************9999999999999999999998 PP

           K-box  96 kkl 98 
                     +++
  XP_010532203.1 166 QEM 168
                     876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.118161IPR002100Transcription factor, MADS-box
CDDcd002653.11E-36280No hitNo description
SuperFamilySSF554554.71E-33296IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.0E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-1882164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.06984170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKIEIKR IENTNNRHVT YSKRRKGMMK KAREITVLCD AKLALIIFAS SGKMHEYCSP  60
STNLAEMLGT YQQILGKRLW DEKHESLSNE MDRIKKDNDN LQIELRRLKG EDIQSMNYKD  120
LIAIESVLET GLVHVRNRQM ECLRELKRRE KMIEEENRQL NFRLQQEMAI ASNARQMENG  180
FPQGAGAMKD CEADDIPFAF RVQPIQPNLQ HIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-18189181MEF2 CHIMERA
6byy_B1e-18189181MEF2 CHIMERA
6byy_C1e-18189181MEF2 CHIMERA
6byy_D1e-18189181MEF2 CHIMERA
6bz1_A1e-18191183MEF2 CHIMERA
6bz1_B1e-18191183MEF2 CHIMERA
6bz1_C1e-18191183MEF2 CHIMERA
6bz1_D1e-18191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532203.11e-158PREDICTED: floral homeotic protein PISTILLATA-like isoform X2
SwissprotQ0HA252e-90MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA5JSC71e-94A5JSC7_CARPA; B-class MADS-box protein PI
STRINGXP_010532204.11e-105(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]