PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532204.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 26093.2 Da    PI: 10.178
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.41.4e-2658108151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien+ nr+vt+skRr+g++KKA E+ vLCda+ a+iif+s+gk++ey+s
  XP_010532204.1  58 KRIENTNNRHVTYSKRRKGMMKKAREITVLCDAKLALIIFASSGKMHEYCS 108
                     79***********************************************96 PP
2K-box70.45.6e-24120194175
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                     yq+  gk+l+++k+esl++e++++kk ++nLq e+R+l+Ged++s+++k+L  +e+ Le++l ++R++++e l+e
  XP_010532204.1 120 YQQILGKRLWDEKHESLSNEMDRIKKDNDNLQIELRRLKGEDIQSMNYKDLIAIESVLETGLVHVRNRQMECLRE 194
                     78888999***************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-3950109IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.11850110IPR002100Transcription factor, MADS-box
CDDcd002657.60E-3551129No hitNo description
SuperFamilySSF554555.1E-3351145IPR002100Transcription factor, MADS-box
PROSITE patternPS00350052106IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-275272IPR002100Transcription factor, MADS-box
PfamPF003197.4E-2259106IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-277287IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-2787108IPR002100Transcription factor, MADS-box
PfamPF014863.1E-15131200IPR002487Transcription factor, K-box
PROSITE profilePS5129712.184133214IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKLKQRFPLS AYCIIISFPS HLTLCLLQNQ ISETERERER EREREREREM GRGKIEIKRI  60
ENTNNRHVTY SKRRKGMMKK AREITVLCDA KLALIIFASS GKMHEYCSPS TNLAEMLGTY  120
QQILGKRLWD EKHESLSNEM DRIKKDNDNL QIELRRLKGE DIQSMNYKDL IAIESVLETG  180
LVHVRNRQME CLRELKRRES SFFLIREVSM PHPSQLRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-1850138181MEF2 CHIMERA
6byy_B2e-1850138181MEF2 CHIMERA
6byy_C2e-1850138181MEF2 CHIMERA
6byy_D2e-1850138181MEF2 CHIMERA
6bz1_A2e-1850140183MEF2 CHIMERA
6bz1_B2e-1850140183MEF2 CHIMERA
6bz1_C2e-1850140183MEF2 CHIMERA
6bz1_D2e-1850140183MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13747RERERERERER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532204.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532204.21e-122PREDICTED: floral homeotic protein PISTILLATA-like isoform X3
RefseqXP_010532206.21e-122PREDICTED: floral homeotic protein PISTILLATA-like isoform X3
SwissprotQ0HA256e-71MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A0D2N9L73e-73A0A0D2N9L7_GOSRA; Uncharacterized protein
STRINGXP_010532204.11e-159(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]