PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532226.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 242aa    MW: 27209.4 Da    PI: 7.0806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-2089139255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAa+a+++a+ +l+g
  XP_010532226.1  89 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAARAYDRAAFRLRG 139
                     7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3288148IPR001471AP2/ERF domain
SMARTSM003802.6E-3789153IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2389148IPR016177DNA-binding domain
PROSITE profilePS5103224.7989147IPR001471AP2/ERF domain
PfamPF008471.0E-1489139IPR001471AP2/ERF domain
CDDcd000182.05E-3189147No hitNo description
PRINTSPR003679.7E-1190101IPR001471AP2/ERF domain
PRINTSPR003679.7E-11113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MANGREQSAL ELIRQHLLSD FSSAETFFAS LHHLTSAVIP EPSSTLVPPV LSMSVTTTAS  60
TSPMPSDDDD DNNIVMMSNH QHDRHEERHY RGVRRRPWGK YAAEIRDPNK KGARVWLGTF  120
DTAIEAARAY DRAAFRLRGS KAILNFPLEA GKHWNADNND GSDHCIVRKR KREVRKEENL  180
ESNDTSARKA VKTDADEVQV CPLTPSRWME FWDGGDDKGM GFLTVPPLSP HPSRGYSQIV  240
VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2988148464ATERF1
3gcc_A1e-2988148464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2700890.0KF270089.1 Cleome hassleriana CRK, PMSR, and integrase-type DNA-binding superfamily protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532226.10.0PREDICTED: ethylene-responsive transcription factor ERF105
SwissprotQ8VY905e-79EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLT1YYW80.0T1YYW8_9ROSI; Integrase-type DNA-binding superfamily protein
STRINGXP_010532226.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.18e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Huang CY, et al.
    Tandem oleosin genes in a cluster acquired in Brassicaceae created tapetosomes and conferred additive benefit of pollen vigor.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14480-5
    [PMID:23940319]
  3. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  4. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  5. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]