PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010532395.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 216aa MW: 23702 Da PI: 8.58

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010532395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.6	4.5e-29	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+l+++ p + r+++++sl+yeA+ r+ +Pv G+vg++ ++++ +q+ XP_010532395.1 4 SCNGCRVLRKGCNQECIIRPCLqwiksPESQANATLFLAKFYGRAGLLNLIESGPYHLRPAIFKSLLYEACGRIVNPVDGSVGLMCSGNWSHCQA 98 6********************************************************************************************** PP DUF260 91 kaelallk 98 +++++l + XP_010532395.1 99 AVNAVLNG 106 99988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.775	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRISCNGCRV LRKGCNQECI IRPCLQWIKS PESQANATLF LAKFYGRAGL LNLIESGPYH 60 LRPAIFKSLL YEACGRIVNP VDGSVGLMCS GNWSHCQAAV NAVLNGSSIT HSPLPGAPAS 120 HQIIPPHKTF DIRHVAKDPA PDDGSSDTPR INKTKAPTRR FKRLDWSQYQ LGESSRNAWP 180 LETMNASADV HFDAGSALGF YDRTNVEDVG LELRLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010532395.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010532396.1	1e-162	PREDICTED: LOB domain-containing protein 42
Swissprot	Q9CA30	1e-101	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	V4KF16	1e-101	V4KF16_EUTSA; Uncharacterized protein
STRING	XP_010532395.1	1e-161	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8463	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	1e-103	LOB domain-containing protein 42