PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532432.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 223aa    MW: 25570.8 Da    PI: 8.7185
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-18126219199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f  vl ps+  + ++++lp  fae++ +g+  + ++l+l d   ++W v++    k gr  +++GW eF  +n+L egD++vF+l ++++f l+v
  XP_010532432.1 126 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGI-SGFIKLQLAD---KQWPVRC--LYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKV 214
                     678899********************8444.3656777666...*******..666666779************************99******* PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++fr 
  XP_010532432.1 215 TAFRV 219
                     99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-23118219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-22123220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-22124218No hitNo description
PROSITE profilePS5086312.943126220IPR003340B3 DNA binding domain
SMARTSM010192.5E-22126220IPR003340B3 DNA binding domain
PfamPF023621.0E-16126219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDSHNHFKRA RLFEDLEDED AEVMYPSSVY PMADSAPVNK GYASSTIQSL FSGSRAEETS  60
KVPKKRGRKK KNPDPEEINS APHEDDSENR SKFYESASAR KRTVTAEERE RAINAAKTFE  120
PVNPFFRVVL RPSYLYRGCI MYLPSGFAEK YLSGISGFIK LQLADKQWPV RCLYKAGRAK  180
FSQGWYEFTL ENNLGEGDVC VFELLRTRDF VLKVTAFRVN EYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-929222315146B3 domain-containing transcription factor VRN1
4i1k_B1e-929222315146B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532432.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532431.11e-164PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
RefseqXP_019057531.11e-164PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
SwissprotQ8L3W11e-139VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLE4MXM21e-137E4MXM2_EUTHA; mRNA, clone: RTFL01-34-E14
TrEMBLV4M6R91e-137V4M6R9_EUTSA; Uncharacterized protein
STRINGXP_010532431.11e-164(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-132B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]