PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010532461.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 550aa MW: 59379.2 Da PI: 6.4192

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010532461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.2e-09	364	412	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010532461.1 364 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 412 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-17	359	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.62E-11	359	416	No hit	No description
PROSITE profile	PS50888	15.478	361	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-17	362	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-6	364	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	367	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MDRVSDKDKF AVEKSNGVNN VNYDSGNTPA DWRVCVSNPV SMSMGSYPPE NPMSSACASS 60 CSPSQMMDSL GQALWHDPNS VQTNGFAGFS VRINTGSSNV MGVANGNLPS YRNSIDRSLE 120 MGWNLPNLMP KGNGFLLPNP SGFLPQSMVQ FPADSGFIER AARFSCFGGG NFSDMMNQPL 180 VVSESMGLYS QVGGTMQGLQ DMQVGAIAEL AHGGQCLRNE VNIGELPKGA PTSVKEGFKN 240 AAGIEEAQVD KPGSSNMSNE TRSSGGSGLN EFQDGKVRSG ENSSKRFDTK KRKRNGQESE 300 PNQLRKTQQS GEEPDNNGDK RQKDEQNTNS PANKTSGGKQ GKQASDPPKE GYIHVRARRG 360 QATNSHSLAE RVRREKISER MKFLQDLVPG CNKVTGKAVM LDEIINYVQS LQRQVEFLSM 420 KLATVNPQLD FNLEGLLAKE ALQLGPVPSS APSFSQNMPM AYPSLPHLSQ PGFIQATLSG 480 MGNPSDVLRR TITSPLSPVN GGGFKRLETH GWEGDLQNVV HMSYGTSAPP EDQEASATES 540 LPPTDMKVEQ

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MDRVSDKDKF AVEKSNGVNN VNYDSGNTPA DWRVCVSNPV SMSMGSYPPE NPMSSACASS  60
CSPSQMMDSL GQALWHDPNS VQTNGFAGFS VRINTGSSNV MGVANGNLPS YRNSIDRSLE  120
MGWNLPNLMP KGNGFLLPNP SGFLPQSMVQ FPADSGFIER AARFSCFGGG NFSDMMNQPL  180
VVSESMGLYS QVGGTMQGLQ DMQVGAIAEL AHGGQCLRNE VNIGELPKGA PTSVKEGFKN  240
AAGIEEAQVD KPGSSNMSNE TRSSGGSGLN EFQDGKVRSG ENSSKRFDTK KRKRNGQESE  300
PNQLRKTQQS GEEPDNNGDK RQKDEQNTNS PANKTSGGKQ GKQASDPPKE GYIHVRARRG  360
QATNSHSLAE RVRREKISER MKFLQDLVPG CNKVTGKAVM LDEIINYVQS LQRQVEFLSM  420
KLATVNPQLD FNLEGLLAKE ALQLGPVPSS APSFSQNMPM AYPSLPHLSQ PGFIQATLSG  480
MGNPSDVLRR TITSPLSPVN GGGFKRLETH GWEGDLQNVV HMSYGTSAPP EDQEASATES  540
LPPTDMKVEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010532461.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010532461.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_010532463.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_019058568.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	R0GH97	0.0	R0GH97_9BRAS; Uncharacterized protein
STRING	XP_010532461.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]