PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010532469.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 509aa MW: 54881.3 Da PI: 6.637

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010532469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.5e-09	323	371	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010532469.1 323 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 371 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-17	318	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.01E-11	318	375	No hit	No description
PROSITE profile	PS50888	15.478	320	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-17	321	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-6	323	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	326	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MSMGSYPPEN PMSSACASSC SPSQMMDSLG QALWHDPNSV QTNGFAGFSV RINTGSSNVM 60 GVANGNLPSY RNSIDRSLEM GWNLPNLMPK GNGFLLPNPS GFLPQSMVQF PADSGFIERA 120 ARFSCFGGGN FSDMMNQPLV VSESMGLYSQ VGGTMQGLQD MQVGAIAELA HGGQCLRNEV 180 NIGELPKGAP TSVKEGFKNA AGIEEAQVDK PGSSNMSNET RSSGGSGLNE FQDGKVRSGE 240 NSSKRFDTKK RKRNGQESEP NQLRKTQQSG EEPDNNGDKR QKDEQNTNSP ANKTSGGKQG 300 KQASDPPKEG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML 360 DEIINYVQSL QRQVEFLSMK LATVNPQLDF NLEGLLAKEA LQLGPVPSSA PSFSQNMPMA 420 YPSLPHLSQP GFIQATLSGM GNPSDVLRRT ITSPLSPVNG GGFKRLETHG WEGDLQNVVH 480 MSYGTSAPPE DQEASATESL PPTDMKVEQ

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MSMGSYPPEN PMSSACASSC SPSQMMDSLG QALWHDPNSV QTNGFAGFSV RINTGSSNVM  60
GVANGNLPSY RNSIDRSLEM GWNLPNLMPK GNGFLLPNPS GFLPQSMVQF PADSGFIERA  120
ARFSCFGGGN FSDMMNQPLV VSESMGLYSQ VGGTMQGLQD MQVGAIAELA HGGQCLRNEV  180
NIGELPKGAP TSVKEGFKNA AGIEEAQVDK PGSSNMSNET RSSGGSGLNE FQDGKVRSGE  240
NSSKRFDTKK RKRNGQESEP NQLRKTQQSG EEPDNNGDKR QKDEQNTNSP ANKTSGGKQG  300
KQASDPPKEG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML  360
DEIINYVQSL QRQVEFLSMK LATVNPQLDF NLEGLLAKEA LQLGPVPSSA PSFSQNMPMA  420
YPSLPHLSQP GFIQATLSGM GNPSDVLRRT ITSPLSPVNG GGFKRLETHG WEGDLQNVVH  480
MSYGTSAPPE DQEASATESL PPTDMKVEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010532469.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010532469.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X2
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	C0Z2X3	0.0	C0Z2X3_ARATH; AT1G68920 protein
STRING	XP_010532461.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]