PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532852.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 304aa    MW: 34086.4 Da    PI: 5.9296
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.8e-35131052103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d++++ +i+w   +nsf+v+d+  f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++
  XP_010532852.1  13 FVMKTYQMVSDPTTDMVITWGCANNSFIVIDPLVFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQKHLLKN 98 
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_010532852.1  99 IARRKHA 105
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-539102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.6E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-171336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-175163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEANGDNNVI APFVMKTYQM VSDPTTDMVI TWGCANNSFI VIDPLVFSQR ILPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANEHFLR GQKHLLKNIA RRKHAHTRGS GYGECVDDGE  120
IVKEIGRLKE EQRELEAEID RISHRLEATE RRPSQMMAFL YKVIDDPDLL QRMILEKDHR  180
KNQIAASASA DNEEFPEKKQ RLTISPVKSE EGVISPTQYP SPDSSVRWVF PTEKGQFGNF  240
DGCGDVSAVS ASSSSSTLSL PESVNGGGRM TWQMLCSETA TFGGAVELSP PPPPYPFSLL  300
GGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25310220129Heat shock factor protein 1
5d5v_B2e-25310220129Heat shock factor protein 1
5d5v_D2e-25310220129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532852.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057569.10.0PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor C-1
SwissprotQ9LV521e-112HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A078HM681e-117A0A078HM68_BRANA; BnaC07g07130D protein
STRINGXP_010532853.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-104heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]