PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532908.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 214aa    MW: 24187.2 Da    PI: 4.9349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11114156251
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       +GV++  k+  WvA I +      +k+++lg+f + eeAa+++++a+ 
  XP_010532908.1 114 SMRGVYF--KNMEWVAAIEVD-----KKQIHLGTFSSREEAARLYDRAAF 156
                     579**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.5E-5114171IPR001471AP2/ERF domain
PfamPF008473.6E-6114156IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-8115159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-8117160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVSLRKRRLL NCCGPTSFIT PLPFLTSEEY TTGVRNPDAE VYKNRGPIEG TLPPIEYPEE  60
NSKIKEVFYP PIPRPLAVKV EPVSSNDSGS FSLKELQHIS AFSVTDPPNQ EPCSMRGVYF  120
KNMEWVAAIE VDKKQIHLGT FSSREEAARL YDRAAFLCGK EPNFELSEEE KRELRTQSWD  180
EFLADKNTEK SIHMGSMETS TSEPKAERGE SSSS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532908.11e-158PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-49ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1J3FIW59e-49A0A1J3FIW5_NOCCA; Ethylene-responsive transcription factor-like protein
TrEMBLM4F1E98e-49M4F1E9_BRARP; Uncharacterized protein
STRINGXP_010532908.11e-157(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.18e-52ERF family protein