PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532995.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 370aa    MW: 41302.1 Da    PI: 7.751
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-113155226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C +++rtG C yG++C+F+H+
  XP_010532995.1 31 DEPDCLYYLRTGSCGYGSNCRFNHP 55
                    6899********************9 PP
2zf-CCCH37.15.4e-127599327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C +f++tG CkyG++Ck++H++
  XP_010532995.1 75 QPNCEYFLKTGACKYGASCKYHHPK 99
                    789********************96 PP
3zf-CCCH352.4e-11123144627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C++++rtGtCk+G++CkF+H++
  XP_010532995.1 123 CSYYMRTGTCKFGNTCKFHHPQ 144
                     ********************97 PP
4zf-CCCH36.21e-11229254227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+++ +GtC+yG+ C+F H++
  XP_010532995.1 229 DQPECRYYMNSGTCRYGSDCRFYHSK 254
                     689*********************95 PP
5zf-CCCH26.11.4e-08277301226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C  ++  G Ck+G+ C+F H+
  XP_010532995.1 277 GQSICASYMIHGVCKFGSGCRFDHP 301
                     7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-42956IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6663057IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-93155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-63457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-53555IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-67299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.57772100IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-97599IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-676100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-57898IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7116145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178117145IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5119144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4121143IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-9123144IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5227254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53227255IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8229254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7230256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6233255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6274305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854275303IPR000571Zinc finger, CCCH-type
SMARTSM003560.014275302IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6277301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MQSSDQSSEN VEDDEETRDL AQQRCYPDHP DEPDCLYYLR TGSCGYGSNC RFNHPVSAAQ  60
GVLSSRDEFP ERIGQPNCEY FLKTGACKYG ASCKYHHPKD RNGALPIFFN ILGLPMRQDR  120
KCCSYYMRTG TCKFGNTCKF HHPQPTSHVP LNGTPSVYGG FSAWSVPRLS YMNGLSLQGP  180
SGYIPFMVSP SHSILSAPSF DTFTSSSSTD IIGSINRHDS VHNLPERPDQ PECRYYMNSG  240
TCRYGSDCRF YHSKERITHI ESSSSAMNSV TLHSRPGQSI CASYMIHGVC KFGSGCRFDH  300
PLPQYPYASM FDSSAYLAYP RLSPIANPFV KTQTLPSRDS DRTKNMEPGR EDGSLLSKKP  360
VGMSEKSLFG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532995.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like isoform X2
TrEMBLA0A061DKN81e-122A0A061DKN8_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1
TrEMBLA0A1U8P1L91e-121A0A1U8P1L9_GOSHI; zinc finger CCCH domain-containing protein 3-like isoform X2
STRINGXP_010532994.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-95C3H family protein