PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533039.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 335aa    MW: 38932.3 Da    PI: 6.0388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed  l ++++ +G g W+t +++ g++R++k+c++rw +yl
   XP_010533039.1 14 RGAWTAQEDNTLREYIRTHGEGKWSTLPKKSGLKRCGKSCRLRWKNYL 61
                     89********************************************97 PP
2Myb_DNA-binding48.51.9e-1567113146
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E+el+v+++++lG++   W++Ia +++ gRt++++k++w++
   XP_010533039.1  67 RGNISPDEEELIVRLHNLLGNRffLWSLIAGRLP-GRTDNEIKNHWNS 113
                      7899******************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.283965IPR017930Myb domain
SuperFamilySSF466899.17E-2712111IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002492.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-231568IPR009057Homeodomain-like
CDDcd001671.24E-91661No hitNo description
SMARTSM007171.4E-1066117IPR001005SANT/Myb domain
PROSITE profilePS5129418.88466119IPR017930Myb domain
PfamPF002491.8E-1367113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2269119IPR009057Homeodomain-like
CDDcd001674.89E-971115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRRSCCAKE GLNRGAWTAQ EDNTLREYIR THGEGKWSTL PKKSGLKRCG KSCRLRWKNY  60
LKPDIKRGNI SPDEEELIVR LHNLLGNRFF LWSLIAGRLP GRTDNEIKNH WNSSLRKRLQ  120
HGQEKTRVPC QNRSKHRKQM TVLSDQADDL VTEPPLSSRN IINGDNNAGV IRTKAVKCTK  180
TLVLPDLPPL HHQSDTTSPL PNPEQEQERE REREQEQERE QEREQDQERG HEQEQERSRE  240
FGEVAKNVAM DEGSALLRDL MSDFDRFESE FIFSEFMDFD VLEGGNLKSL VSSEEMLQDW  300
GHDESVQVNL DLNRPFTSNL DRDDDGEDWF GHKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251211925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533039.10.0PREDICTED: transcription factor TT2 isoform X1
SwissprotQ9FJA22e-91TT2_ARATH; Transcription factor TT2
TrEMBLD7MHT14e-89D7MHT1_ARALL; Uncharacterized protein
STRINGXP_010533039.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-91MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]