PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533267.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 244aa    MW: 27882.9 Da    PI: 8.1031
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.9e-101692071854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     lF+   ++yp+ +e+  LA+++gL+++qV++WF N R +
  XP_010533267.1 169 LFQHflHPYPNDSEKLMLASETGLSKNQVSNWFINARVR 207
                     5775569******************************98 PP
2BELL97.11.5e-3136107172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++e+q++ akL+ lle+V+ r+ +y++ql+ vi sFe++ag gsakpYt lAl+a++rhF +L+dai++qi
  XP_010533267.1  36 ENREVQIRVAKLVGLLEQVEARFDKYCDQLEHVIISFEEIAGSGSAKPYTGLALQAMTRHFGSLQDAIISQI 107
                     689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.2E-616105IPR006563POX domain
PfamPF075262.3E-2426103IPR006563POX domain
CDDcd000861.38E-11151212No hitNo description
SMARTSM003893.9E-10151215IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27156217IPR009057Homeodomain-like
SuperFamilySSF466898.13E-18156219IPR009057Homeodomain-like
PfamPF059201.6E-17168207IPR008422Homeobox KN domain
PROSITE profilePS5007111.872170211IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MFIFEELFPG RRRGGFGLSA EIKAELCSSG FMSPPENREV QIRVAKLVGL LEQVEARFDK  60
YCDQLEHVII SFEEIAGSGS AKPYTGLALQ AMTRHFGSLQ DAIISQINSA RRKHSQDLPR  120
ISSGLSRLGL FETNKLKHCP QVSSLQLKHA WRPIRGLPDT SISILRAWLF QHFLHPYPND  180
SEKLMLASET GLSKNQVSNW FINARVRLWK PMIEEMYREE FAYSLEESNR PRNGISMDRE  240
GVED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-18157218566Homeobox protein Meis2
3k2a_B4e-18157218566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533266.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X3
RefseqXP_010533267.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X3
SwissprotQ1PFD11e-114BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A087HIM71e-114A0A087HIM7_ARAAL; Uncharacterized protein
STRINGXP_010533264.11e-178(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-112BEL1-like homeodomain 11