PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533325.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 210aa MW: 23361.2 Da PI: 10.1753

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.4	9.4e-29	42	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r+eme ++r+++lk+plWe++s+kmre gf+rs+k+Ckek+en+ k++k++keg+++++ + +t+++ d+le XP_010533325.1 42 RWPRSETLALLRIRSEMELAFRDSNLKAPLWEQISRKMRELGFRRSAKKCKEKFENVYKYHKRTKEGRSGKR--EGKTYQFSDELE 125 8********************************************************************974..445699998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0044	39	101	IPR001005	SANT/Myb domain
CDD	cd12203	1.58E-28	41	106	No hit	No description
PROSITE profile	PS50090	6.853	41	99	IPR017877	Myb-like domain
Pfam	PF13837	4.3E-20	41	126	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MLGDSGEVLE SSAVAASAGG EEKDVKLEDS GERATVGGGG NRWPRSETLA LLRIRSEMEL 60 AFRDSNLKAP LWEQISRKMR ELGFRRSAKK CKEKFENVYK YHKRTKEGRS GKREGKTYQF 120 SDELEAFENI HHYPTEPKSR PVKPPTTTTT TTAASIVPWI SSSNPSSGTN PTLFTKQQPT 180 PPFVLNHSAH TVLGSGHKLT NPYNFARNVP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533325.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521043.1	1e-155	PREDICTED: trihelix transcription factor GT-2-like
Refseq	XP_010533325.1	1e-155	PREDICTED: trihelix transcription factor GT-2-like, partial
Swissprot	Q39117	7e-61	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A178W7Z2	2e-58	A0A178W7Z2_ARATH; GT2
STRING	XP_010521043.1	1e-154	(Tarenaya hassleriana)
STRING	XP_010533325.1	1e-154	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-56	Trihelix family protein