PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533371.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 260aa MW: 29388.9 Da PI: 9.5083

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.2	6.6e-53	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLk+kv++++l++ ++i+evd++k++PwdLp eke yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+++ XP_010533371.1 14 LPPGFRFHPTDEELVVQYLKRKVHSSPLPA-SIIPEVDVCKADPWDLPGG---LEKERYFFSTREAKYPNGSRSNRATGSGYWKATGIDKRVVTS 104 79**************************.89***********44...5789****************************999987 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfy+g+ p+g++tdW+mheyrl XP_010533371.1 105 rGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138 57788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-61	10	160	IPR003441	NAC domain
PROSITE profile	PS51005	59.063	14	160	IPR003441	NAC domain
Pfam	PF02365	6.0E-28	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVHSSP LPASIIPEVD VCKADPWDLP 60 GGLEKERYFF STREAKYPNG SRSNRATGSG YWKATGIDKR VVTSRGNQVV GMKKTLVFYR 120 GKPPHGSRTD WIMHEYRLAS PPPSSMGPTK NWVLCRIFLK KRGHNKSEDD VDSCKKNHNY 180 CDNDTNNDDG DHRNDPRKKS SPVLIDFMRK EWTTDLNSDP KSPSGSGSSG VTTEVFSDES 240 EDVDGSSSSC SSFNHFRRKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-53	12	166	18	174	NAC domain-containing protein 19
3swm_B	2e-53	12	166	18	174	NAC domain-containing protein 19
3swm_C	2e-53	12	166	18	174	NAC domain-containing protein 19
3swm_D	2e-53	12	166	18	174	NAC domain-containing protein 19
3swp_A	2e-53	12	166	18	174	NAC domain-containing protein 19
3swp_B	2e-53	12	166	18	174	NAC domain-containing protein 19
3swp_C	2e-53	12	166	18	174	NAC domain-containing protein 19
3swp_D	2e-53	12	166	18	174	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533371.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521426.1	0.0	PREDICTED: NAC domain-containing protein 83-like
Refseq	XP_010533371.1	0.0	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-117	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1J3I237	1e-123	A0A1J3I237_NOCCA; NAC transcription factor 29
TrEMBL	A0A1J3K7S7	1e-123	A0A1J3K7S7_NOCCA; NAC transcription factor 29 (Fragment)
STRING	XP_010521426.1	0.0	(Tarenaya hassleriana)
STRING	XP_010533371.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-113	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]