PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533429.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 225aa MW: 25369.5 Da PI: 8.4699

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.1	2.7e-15	70	113	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE++l++++ ++lG+g+Wk Ia + k+R+ q+ s+ qk+ XP_010533429.1 70 WTEEEHQLFLEGLEKLGKGDWKGIATRYVKTRSSTQVASHAQKH 113 ******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.925	62	118	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-17	63	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-16	65	117	IPR006447	Myb domain, plants
SMART	SM00717	8.5E-11	66	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-10	69	113	IPR009057	Homeodomain-like
CDD	cd00167	5.26E-11	70	114	No hit	No description
Pfam	PF00249	1.4E-12	70	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSENTEPGQI GDTREPFRGG VKIFGVYLTE ETKQVRDGDN TVSSVGLEDS EIGSCDCEPP 60 LKRRNKGVIW TEEEHQLFLE GLEKLGKGDW KGIATRYVKT RSSTQVASHA QKHFIRQEKP 120 DQKKQRRSIF DTPFCSETRS PRDSEVANPS GGTPSLPQQK ACVSTSGSTV TTNNGINSYA 180 LPMWPRPMGV KQVNSLEYMW GYPCYRMFEF MAPFVPSSAR IERRH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533429.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533429.1	1e-169	PREDICTED: myb-like protein I
Refseq	XP_010537287.1	1e-169	PREDICTED: myb-like protein I
STRING	XP_010533429.1	1e-169	(Tarenaya hassleriana)
STRING	XP_010537287.1	1e-169	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	7e-19	MYB_related family protein